Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1005
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9672| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)             29   5.8  
SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)              29   5.8  

>SB_9672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 285 VFIRNLLHSFP-PRYANFQYPVPQFLILNSFTIIEH 181
           +F RN++   P P+Y   Q P P F ILN   +I+H
Sbjct: 104 LFYRNIVQKRPIPQYREPQRPPPPFCILNVKKVIKH 139


>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
          Length = 965

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 561 ISMLYLTLVFKYQWCILPFKCKHRLANKGSSKTGXCNIPETHEDL 695
           +++LYLT       C   F+C  + A K + K     +P TH+D+
Sbjct: 11  LAVLYLTCFISSSLC---FQCAEKGAGKDAEKLQIHIVPHTHDDV 52


>SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)
          Length = 887

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 561 ISMLYLTLVFKYQWCILPFKCKHRLANKGSSKTGXCNIPETHEDL 695
           +++LYLT       C   F+C  + A K + K     +P TH+D+
Sbjct: 11  LAVLYLTCFISSSLC---FQCAEKGAGKDAEKLQIHIVPHTHDDV 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,051,150
Number of Sequences: 59808
Number of extensions: 441879
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)