Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1005
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05320.1 68415.m00560 beta-1,2-N-acetylglucosaminyltransferas...    29   2.7  
At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identic...    29   3.6  
At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identic...    29   3.6  
At4g20940.1 68417.m03034 leucine-rich repeat family protein cont...    28   6.3  

>At2g05320.1 68415.m00560 beta-1,2-N-acetylglucosaminyltransferase
           II identical to beta-1,2-N-acetylglucosaminyltransferase
           II GI:10183645 from [Arabidopsis thaliana]
          Length = 430

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 426 LFLVKHEGFFEK*NKKHQSFKCCKYEN*SRVYRVEKY*NSF 304
           L +V H+G+FE+ N+  +S K C+ +     Y    Y  SF
Sbjct: 129 LLIVSHDGYFEEMNRIVESIKFCQVKQIFSPYSPHIYRTSF 169


>At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 545

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 282 FIRNLLHSFPPRYANFQYPVPQFLILNSFTIIEHRTD 172
           F  N   SF P Y +F      F++LNS+T+ ++ +D
Sbjct: 318 FPSNESGSFSPLYYSFNAGGAHFIVLNSYTLYDNSSD 354


>At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 428

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 282 FIRNLLHSFPPRYANFQYPVPQFLILNSFTIIEHRTD 172
           F  N   SF P Y +F      F++LNS+T+ ++ +D
Sbjct: 237 FPSNESGSFSPLYYSFNAGGAHFIVLNSYTLYDNSSD 273


>At4g20940.1 68417.m03034 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leucine-rich
           repeat receptor-like protein kinase INRPK1 [Ipomoea nil]
           gi|14495542|gb|AAB36558
          Length = 977

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +1

Query: 586 YLSINGVYYHLNVSTDWQTKAQVKLGVVISPKHTKILHEKNP*SLTPIFKKFKSVIAVSX 765
           +L  N  Y  ++ +    T  ++  GV  S KH  + H +   SLT  F+ F+++  +  
Sbjct: 219 FLLTNASYVDISGNRLVTTSGKLLPGVSESIKHLNLSHNQLEGSLTSGFQLFQNLKVLDL 278

Query: 766 LYSLFQFESP 795
            Y++   E P
Sbjct: 279 SYNMLSGELP 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,019,090
Number of Sequences: 28952
Number of extensions: 329586
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)