Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1004
(750 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D57655 Cluster: PREDICTED: similar to CG1962-PA,... 95 2e-18
UniRef50_Q17EI5 Cluster: Putative uncharacterized protein; n=1; ... 89 8e-17
UniRef50_UPI00015B46C5 Cluster: PREDICTED: hypothetical protein;... 71 4e-11
UniRef50_Q9VIK6 Cluster: CG1962-PA, isoform A; n=2; Sophophora|R... 57 5e-07
UniRef50_UPI0000519FE6 Cluster: PREDICTED: similar to CG1962-PA,... 49 1e-04
UniRef50_UPI0000DB6B3C Cluster: PREDICTED: hypothetical protein,... 35 1.9
UniRef50_Q229H8 Cluster: Putative uncharacterized protein; n=1; ... 35 2.5
UniRef50_O85018 Cluster: ExiT; n=4; Corynebacterineae|Rep: ExiT ... 34 3.3
UniRef50_A5C5B5 Cluster: Putative uncharacterized protein; n=1; ... 34 3.3
UniRef50_A7E5U4 Cluster: Putative uncharacterized protein; n=1; ... 34 3.3
UniRef50_UPI00015B611E Cluster: PREDICTED: similar to conserved ... 34 4.3
UniRef50_Q9DGL1 Cluster: Retinitis pigmentosa GTPase regulator-l... 34 4.3
UniRef50_Q24IK5 Cluster: AT hook motif family protein; n=1; Tetr... 34 4.3
UniRef50_Q3IGY6 Cluster: Putative membrane protein; n=8; Proteob... 33 7.5
UniRef50_Q03LT5 Cluster: Predicted protein; n=2; Streptococcus t... 33 7.5
UniRef50_Q7S1G1 Cluster: Putative uncharacterized protein NCU074... 33 7.5
UniRef50_Q60A92 Cluster: Probable potassium transport system pro... 33 7.5
UniRef50_Q1RLR5 Cluster: B-cell CLL/lymphoma 11A; n=6; Euteleost... 33 9.9
UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban... 33 9.9
UniRef50_Q3HS73 Cluster: 22k protein; n=1; Porcine adenovirus 3|... 33 9.9
UniRef50_A0DLR2 Cluster: Chromosome undetermined scaffold_556, w... 33 9.9
UniRef50_Q5AJD3 Cluster: Putative uncharacterized protein; n=1; ... 33 9.9
>UniRef50_UPI0000D57655 Cluster: PREDICTED: similar to CG1962-PA,
isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG1962-PA, isoform A - Tribolium castaneum
Length = 707
Score = 94.7 bits (225), Expect = 2e-18
Identities = 66/170 (38%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Frame = +3
Query: 159 ENKPVDDSTTEISNEQEKEKERVLTPLVRQPLEYIAATXXXXXXXXXXXXQDRQGADSPV 338
+N+P+ D+ E +++ ERVL PLVRQPLEY++ + + +DSPV
Sbjct: 555 QNQPIPDA------EVQEKPERVLKPLVRQPLEYLSVEVRKRSSSRRKN-KFAERSDSPV 607
Query: 339 YPT--PPKVTYQK--SSNKKKRDYRPIEVSPLARADTEWNGTTLQFY--NRNFNSPTPSV 500
PK++Y SS +K+RD++ + + D WNG T+QF+ NRN SPTPS
Sbjct: 608 THIIGSPKISYSSRPSSGRKRRDFKNVPEN-----DATWNGNTIQFWSSNRNIASPTPSQ 662
Query: 501 SGRTGKIYQGWNPETDTWDIKQSTASQEIHKLRKLELSYAEVLRNADXTK 650
+GK ++ + S ASQE+HKL+KL+LSYAEV+R AD K
Sbjct: 663 G--SGK-----------FEFRPSLASQELHKLKKLDLSYAEVVRKADSKK 699
>UniRef50_Q17EI5 Cluster: Putative uncharacterized protein; n=1; Aedes
aegypti|Rep: Putative uncharacterized protein - Aedes
aegypti (Yellowfever mosquito)
Length = 778
Score = 89.4 bits (212), Expect = 8e-17
Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 19/169 (11%)
Frame = +3
Query: 222 RVLTPLVRQPLEYIAATXXXXXXXXXXXXQ---DRQGADSPV-YPTPPKVTYQKSSNKKK 389
R+LTP RQPLEY++ + +DSP+ PTPP+V Y + K +
Sbjct: 609 RILTPYKRQPLEYLSVAVGVNKKKSRRRRNRGDNLDRSDSPIALPTPPRV-YTSTGKKGR 667
Query: 390 RDYRPIEVS-PLAR------------ADTEWNGTTLQFYNRNFNSPTPSVSG--RTGKIY 524
YRP + PLA A TEWNG ++ YNR+ NSPTP+ S R+G+ +
Sbjct: 668 SSYRPWNPNEPLASPAAGNSSASTATAATEWNGNSMTIYNRSVNSPTPNASSSQRSGQTF 727
Query: 525 QGWNPETDTWDIKQSTASQEIHKLRKLELSYAEVLRNADXTKTRRKKHQ 671
+ T + ++ +HKL+KL+LSYAEVLR AD K ++ Q
Sbjct: 728 RSSTAST------TAGSASNLHKLKKLDLSYAEVLRRADHCKHHSQRRQ 770
>UniRef50_UPI00015B46C5 Cluster: PREDICTED: hypothetical protein; n=1;
Nasonia vitripennis|Rep: PREDICTED: hypothetical protein
- Nasonia vitripennis
Length = 781
Score = 70.5 bits (165), Expect = 4e-11
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Frame = +3
Query: 243 RQPLEYIAA-----TXXXXXXXXXXXXQDRQGADSPVYPTP-PKVTYQKSSNKKKRDYRP 404
RQPLEY++ T + GA + V PTP P+V +S ++++ +RP
Sbjct: 628 RQPLEYLSVQVRKKTSAKKSRRLQSGGETSPGAAADVIPTPNPRVVQLRSGSRRR--FRP 685
Query: 405 IEVSPLARADTEWNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDTWDIKQSTASQE 584
++ S + WNG T FY SP + + + G E T K+ TAS+E
Sbjct: 686 LQASDVTDGFV-WNGNTTHFYPSK--SPRARQQQQQQQQHPGSATEAGTESYKRGTASEE 742
Query: 585 IHKLRKLELSYAEVLRNADXTK 650
+ KLR+LE+SYAEVLR + +K
Sbjct: 743 VAKLRRLEMSYAEVLRMPNKSK 764
>UniRef50_Q9VIK6 Cluster: CG1962-PA, isoform A; n=2; Sophophora|Rep:
CG1962-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 790
Score = 56.8 bits (131), Expect = 5e-07
Identities = 29/71 (40%), Positives = 44/71 (61%)
Frame = +3
Query: 429 ADTEWNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDTWDIKQSTASQEIHKLRKLE 608
+ + WNG+ + YN+N N+P S G++ E + + +T SQ++HKL+KL+
Sbjct: 697 SSSNWNGSPMVIYNKNMNTPQTS----RGRVI-----ELNGVEFYHNTVSQDLHKLKKLD 747
Query: 609 LSYAEVLRNAD 641
LSYAEVLR AD
Sbjct: 748 LSYAEVLRRAD 758
>UniRef50_UPI0000519FE6 Cluster: PREDICTED: similar to CG1962-PA,
isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar
to CG1962-PA, isoform A - Apis mellifera
Length = 755
Score = 48.8 bits (111), Expect = 1e-04
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Frame = +3
Query: 345 TPPKVTYQKSSNKKKRDYRPIEVSPLARADTEWNGTTLQFY---NRNFNSPTPSV---SG 506
T PK KS++ K+ +RP ++ + NG T Y N+ +SP S S
Sbjct: 648 TNPKFVPSKSNSGGKKKFRPFTIA-------DQNGGTCNGYAYPNKTKDSPPNSAAKSSN 700
Query: 507 RTGKIYQGWNPETDTWDIKQSTASQEIHKLRKLELSYAEVLRNADXTK 650
G N + D K STAS E+ +L++LE+SYAEVLR + +K
Sbjct: 701 NAGNNSSQHNNSFEYRDYKPSTASVEVARLKRLEMSYAEVLRLPNKSK 748
>UniRef50_UPI0000DB6B3C Cluster: PREDICTED: hypothetical protein,
partial; n=1; Apis mellifera|Rep: PREDICTED:
hypothetical protein, partial - Apis mellifera
Length = 418
Score = 35.1 bits (77), Expect = 1.9
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +2
Query: 89 SESRTERKGNSRNEQEES--GG**QRKQTSGR*HHRDIKRTREGKRTSAHTVGASAAGVH 262
S S TE+ G+S Q S GG ++ +SG T TS T G+S+ G+
Sbjct: 193 SSSSTEQPGSSSTAQSSSSTGGWSTQQSSSGNTERPSGSSTPS---TSGSTGGSSSTGLP 249
Query: 263 SGD*KEIQTSQQETQSGPTRRRQPGVSYAAQSN 361
S +S QS + QPG S AQS+
Sbjct: 250 SSSSTGGSSSSSTQQSSSSSTEQPGSSSTAQSS 282
>UniRef50_Q229H8 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 218
Score = 34.7 bits (76), Expect = 2.5
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 135 KKAVGDNKENKPVDDSTTEISNEQEKEKE 221
KK GDNK+N DD + NE +KEKE
Sbjct: 144 KKINGDNKQNNIYDDDNSSQQNESQKEKE 172
>UniRef50_O85018 Cluster: ExiT; n=4; Corynebacterineae|Rep: ExiT -
Mycobacterium smegmatis
Length = 1122
Score = 34.3 bits (75), Expect = 3.3
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = +2
Query: 170 SGR*HHRDIKRTREGKRTSAHTVGASAAGVHSGD*KEIQTSQQETQSGPTRRRQPGVS 343
+ R HRD R R G R HT A A G H+G QSGP RR +PG +
Sbjct: 457 AARSDHRDRHRHRAGHRRR-HTPAAHARGTHNGG--------PHQQSGPARRGRPGAA 505
>UniRef50_A5C5B5 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 762
Score = 34.3 bits (75), Expect = 3.3
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +1
Query: 145 WVITKKTNQWTIAPPRYQTNKRRKKNECSHRWCVSRWST*RRLERNPDIATGNTVRTDKA 324
WV+T +QW + R++ NK K S++ S+ S +P T N +
Sbjct: 135 WVVTVNCSQWKSSSHRFKNNKNGSKQNSSNK-ASSKKSFCMPNYDHPGHTTKNYAKLQSR 193
Query: 325 PTARC 339
PTA C
Sbjct: 194 PTANC 198
>UniRef50_A7E5U4 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 646
Score = 34.3 bits (75), Expect = 3.3
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +3
Query: 309 QDRQGADSPVYPTPPKVTYQKSSNKKKRDYRPIEVSPLARADTEWNGTTLQFYNRNFNSP 488
Q R + P+ P + T +S ++ + SPL R+ W G TL + N P
Sbjct: 376 QPRHHSGRPLQPLQLRETMSRSRSESLQ-------SPL-RSSMSWKGETLDYANYQTGQP 427
Query: 489 TPSVSGRTGKIYQ 527
+P +GR +YQ
Sbjct: 428 SPQSTGRQQSLYQ 440
>UniRef50_UPI00015B611E Cluster: PREDICTED: similar to conserved
hypothetical protein; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to conserved hypothetical protein -
Nasonia vitripennis
Length = 2113
Score = 33.9 bits (74), Expect = 4.3
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 321 GADSPVYPTPPKVTYQKSSNKKKRDYRPIEVSPLARADTEWNGTTLQFYNRNFNSPTPSV 500
G ++ Y TP + Y+ S + + D R +VSP + T W+ F + +SP P+
Sbjct: 1783 GIEAARYITPTSIHYKGSHDNELSDIRN-QVSPTSPNSTGWSSEPPSFLSSEPSSPAPTS 1841
Query: 501 SG 506
+G
Sbjct: 1842 AG 1843
>UniRef50_Q9DGL1 Cluster: Retinitis pigmentosa GTPase regulator-like
protein; n=2; Takifugu rubripes|Rep: Retinitis
pigmentosa GTPase regulator-like protein - Fugu rubripes
(Japanese pufferfish) (Takifugu rubripes)
Length = 791
Score = 33.9 bits (74), Expect = 4.3
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
Frame = +2
Query: 59 KEPEXGETR*SESRTERKG--NSRNEQEESGG**QRKQTSGR*HHRDIKRTREGKRTSAH 232
+E E T SES E+KG R+ +EE G + G H + K+ E +
Sbjct: 390 EEEERSSTAESESEDEKKGERKERDVEEEEGESEVEESEEGSDHESERKKASESEEEGEE 449
Query: 233 TVGASAAGVHSGD*K---EIQTSQQETQSGPTRRRQPGVSYAAQSNLSE--IIEQEET 391
S + GD K E ++ ET+ Q +SN E E+EE+
Sbjct: 450 EEADSLSEEEEGDSKSDAEESDAESETEGEGAEEEQSSTEKEGESNEEEQSSTEKEES 507
>UniRef50_Q24IK5 Cluster: AT hook motif family protein; n=1;
Tetrahymena thermophila SB210|Rep: AT hook motif family
protein - Tetrahymena thermophila SB210
Length = 1786
Score = 33.9 bits (74), Expect = 4.3
Identities = 23/90 (25%), Positives = 42/90 (46%)
Frame = +2
Query: 59 KEPEXGETR*SESRTERKGNSRNEQEESGG**QRKQTSGR*HHRDIKRTREGKRTSAHTV 238
KEPE + +ES E++ S E+EE +R+ + + +KRT + ++
Sbjct: 1560 KEPESEQDEQNESEQEQENESEQEEEEDDKQTKRRGRKPKNVTQAVKRTTRHNSANKNSD 1619
Query: 239 GASAAGVHSGD*KEIQTSQQETQSGPTRRR 328
+ G + +E Q +E Q+ TR+R
Sbjct: 1620 KEESEGEEENE-EEEQEEDEEEQTRVTRKR 1648
>UniRef50_Q3IGY6 Cluster: Putative membrane protein; n=8;
Proteobacteria|Rep: Putative membrane protein -
Pseudoalteromonas haloplanktis (strain TAC 125)
Length = 699
Score = 33.1 bits (72), Expect = 7.5
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +3
Query: 438 EWNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDTWDIKQSTASQEIHKLRKLELSY 617
E+N T + FY+ N++S P VSGR Q + IH LR L+
Sbjct: 377 EFNDTEVAFYHVNYHSRRPLVSGRVSNFTQASLAQDLAMITTTEITEDNIHNLRAFSLAK 436
Query: 618 AE 623
E
Sbjct: 437 NE 438
>UniRef50_Q03LT5 Cluster: Predicted protein; n=2; Streptococcus
thermophilus|Rep: Predicted protein - Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9)
Length = 100
Score = 33.1 bits (72), Expect = 7.5
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 309 QDRQGADSPVYPTPPKVTYQKSSNKKKRDYRPIEVSPLARADTE-WNGTTLQFYN 470
QDR Y T P V+ Q +SN + DY V P R TE N TLQ YN
Sbjct: 20 QDRDCNFFQQYGTAPLVSTQTNSNSYEDDYSTPTVRPQQRQQTEASNYQTLQDYN 74
>UniRef50_Q7S1G1 Cluster: Putative uncharacterized protein
NCU07412.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU07412.1 - Neurospora crassa
Length = 1321
Score = 33.1 bits (72), Expect = 7.5
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = +3
Query: 150 DNKENKPVDDSTTEISNEQEKEKERVLTPLVRQPLEYIAATXXXXXXXXXXXXQDRQGAD 329
D + K ++ E E+EKEKE+ L P V +P + + +
Sbjct: 507 DKAQEKEKENEKVEKEKEKEKEKEKELEPAVSEPGSVASTPTPVITKKKEKVVEKPVAIE 566
Query: 330 SPVYPTPPKV 359
P P PP V
Sbjct: 567 KPAPPPPPPV 576
>UniRef50_Q60A92 Cluster: Probable potassium transport system
protein kup; n=4; Proteobacteria|Rep: Probable potassium
transport system protein kup - Methylococcus capsulatus
Length = 626
Score = 33.1 bits (72), Expect = 7.5
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = -2
Query: 485 GVEIPIVELQSGTVPFGVSSGERTYFYRPIITFLLVR*FLISYFGRRRIHRAVGALSVLT 306
G+ P + + G+++ +++ P +L+ FLI G R+ R G + +L
Sbjct: 120 GMITPAISVLGAMEGLGIATAALSHYVVPASILILLALFLIQRRGTERVGRLFGPIMLLW 179
Query: 305 VFPVAMSGFLSSRR 264
+ GF+S R+
Sbjct: 180 FLSIGTLGFVSLRQ 193
>UniRef50_Q1RLR5 Cluster: B-cell CLL/lymphoma 11A; n=6;
Euteleostomi|Rep: B-cell CLL/lymphoma 11A - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 829
Score = 32.7 bits (71), Expect = 9.9
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 65 PEXGETR*SESRTERKGNSRNEQEESGG**QRKQTSGR*HHRDIKRTREGKRTSAH-TVG 241
PE GE E E + E+EE G + ++ R R+ +R R+G R + H ++
Sbjct: 458 PENGEEEEEEEEEEEEEEEEEEEEEEGEEEELERERERERERERERDRDGGRNNYHFSLN 517
Query: 242 ASAAGVHSGD 271
AA H +
Sbjct: 518 LQAARHHENN 527
>UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana
mild mosaic virus|Rep: RNA-dependant RNA polymerase -
Banana mild mosaic virus
Length = 1771
Score = 32.7 bits (71), Expect = 9.9
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 348 PPKVTYQKSSNKKKRDYRPIEVS-PLARADTEWNGTTLQFYNRNFNSPTPSVSGRTGKIY 524
P + +Y +++ D P + + + +N T+ +F N NF S P+ T +
Sbjct: 1073 PCQASYDNETDRMIFDEVPTDFEYHMMGEEYSYNATSHRFINTNFRSRMPANLRFTESVS 1132
Query: 525 QGWNPETDTWDIKQSTA 575
+ W ETD +++ S A
Sbjct: 1133 EPWLVETDINEVRMSEA 1149
>UniRef50_Q3HS73 Cluster: 22k protein; n=1; Porcine adenovirus
3|Rep: 22k protein - Porcine adenovirus 3 (PAdV-3)
Length = 225
Score = 32.7 bits (71), Expect = 9.9
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 309 QDRQGADSPVYPT-PPKVTYQKSSNKKKRDYRPIEVSPLARADTEWNGTTLQFYNRNFNS 485
++ + + PV PT P K +Y SS+ K R V P WN T++ ++ +
Sbjct: 89 EELEEEEEPVTPTRPSKPSYTNSSSSKSISQRRNSVVPSEAR--RWNQTSIHRSSQPGRT 146
Query: 486 PTPSVSGRTGKIYQ 527
P PS R+ + Y+
Sbjct: 147 PPPSARRRSWRRYR 160
>UniRef50_A0DLR2 Cluster: Chromosome undetermined scaffold_556,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_556,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1281
Score = 32.7 bits (71), Expect = 9.9
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 150 DNKENKPVDDSTTEISNEQEKEKERV 227
DNK+NK D+ E E+EKEKER+
Sbjct: 689 DNKDNKEKDNKEKEKEKEKEKEKERL 714
>UniRef50_Q5AJD3 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 345
Score = 32.7 bits (71), Expect = 9.9
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +2
Query: 29 DITAPETPTLKEPEXGETR*SESRTERKGNSRNEQEESGG**QRKQTSGR*HHRDIKRTR 208
+ PE P E R +SR R+ NSR+ G ++ GR H R R +
Sbjct: 47 EAAGPEAAKKSYPREKEGRSEDSRERRRENSRSGHSRENGHSSHSRSYGREHGRGSDRDK 106
Query: 209 EGKRTS 226
+ +R S
Sbjct: 107 DRERRS 112
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,971,634
Number of Sequences: 1657284
Number of extensions: 15249254
Number of successful extensions: 52268
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 47345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51976
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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