Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1004
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    29   0.94 
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    28   1.2  
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    28   1.2  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    28   1.6  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    28   1.6  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   2.9  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   2.9  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    26   5.0  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   5.0  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   6.6  
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    26   6.6  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   8.7  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   8.7  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   8.7  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   8.7  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 330  SPVYPTPPKVT-YQKSSNKKKRDYRPIEVSPLARADTEWNGT 452
            SPV+ TPP  + Y + S     DY PI VSP   A  E  GT
Sbjct: 1557 SPVFVTPPTNSPYAEVSG----DYNPIHVSPTFAAFVELPGT 1594


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 138 KAVGDNKENKPVDDSTTEISNEQE----KEKERVLTPLVRQPLEYI 263
           KA GD +     D S  +ISN+Q+    KE+E    P++   L+ I
Sbjct: 102 KATGDKETEDAKDSSNQDISNDQKAPSFKEQEPATLPILPNDLQSI 147


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +1

Query: 148 VITKKTNQWTIAPPRYQTNKRRKKNECSHRWCVSRWST*RRLERNPDIATGNTVRTDK 321
           + TK TN   I+P  + T KR+ K E    +  + +S   R E+  D+ TG+ ++  +
Sbjct: 255 LFTKTTNTEKISPTPFSTPKRKSKKETV--FVKAIYSFTGRNEKELDLHTGDVIQVSE 310


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = -2

Query: 575 GGALLYVPRVCLGVPALIDLTSSATHARCWGVEIPIVELQSGTVPFGVSSGERTYFY 405
           GGA+  VP   L    L++ TS ++ + C G+ + +  L++   P+  ++ ++   Y
Sbjct: 491 GGAITSVPPYSLQNSQLMNGTSMSSPSACGGISLILSALKAQKKPYTAAAIKKAVMY 547


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 144 VGDNKENKPVDDSTTEISNEQEKEKERVLTPLVRQPLEYIAAT 272
           V   +E   + ++  EI  +++K+ E V +  V  PL+ IAA+
Sbjct: 474 VNSKEEEDLITETAQEIEEQRQKQMESVRSQYVLTPLDPIAAS 516


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 433 TPNGTVPLCNSTIGISTPQHRA*VAELVRSIKAGTPRQTRG-T*SRAPPRRKYTNS 597
           TP+ T+P  NS++ + T       + ++ S    T   T   T S  P    YT+S
Sbjct: 539 TPSTTIPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTPALTHSITPSNTSYTSS 594


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 533 PALIDLTSSATHARCWGVEIPIVELQSGTVPF 438
           P +I+L  + T +  W V   ++EL  G  P+
Sbjct: 173 PEVIELVGATTASDIWSVGCTVIELLDGNPPY 204


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 153 NKENKPVDDSTTEISNEQEKEKERVLTPLV 242
           ++EN  ++ S T  S E EKEKE + + L+
Sbjct: 112 SEENLKIESSITFTSEEIEKEKENIKSVLL 141


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 351 PKVTYQKSSNKKKRDYRPIEVSPLARADTEWNGTTLQFYNRNFNS 485
           P  ++ + S+       P E S  A A   +N T   +YN+N NS
Sbjct: 393 PGFSHGRDSSDTSCTESPPEPSHFAWAFDPYNATASPYYNQNINS 437


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 134 LARFWSYLFFRFDFHFIWF 78
           LARF+  +FF F F   WF
Sbjct: 284 LARFFCLIFFPFLFFLFWF 302


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 318 QGADSPVYPTPPKVTYQKSSNKKKRDYRPIEVSPLARADTEWN 446
           + A+SPV   PP  + Q +S+     +RP+  S   +++T  N
Sbjct: 211 KNANSPV--APPSASSQLNSSNPSSPFRPLSASTDKQSNTSLN 251


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +3

Query: 450 TTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDT---WDIKQSTASQEIHKLRKLELSYA 620
           TT+++YN NF +   + S    ++     PE  +   + +K    S +I    K  L   
Sbjct: 35  TTIRWYNANFQAVQNNFSDYKNELISSHRPEASSLLDFLVKDQKKSGDISLHTKFNLYVD 94

Query: 621 EVLRNADXTKTRR 659
           ++L+ ++  + ++
Sbjct: 95  DLLKKSEKGQIKK 107


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 220 SFSFSCSFDISVVLSSTGLFSLLSPTAFFLL 128
           SFS++ S    +++SS    S+L+ TAF+ +
Sbjct: 18  SFSYAFSIKQEIIVSSHNASSILNTTAFWFV 48


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +3

Query: 450 TTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDT---WDIKQSTASQEIHKLRKLELSYA 620
           TT+++YN NF +   + S    ++     PE  +   + +K    S +I    K  L   
Sbjct: 35  TTIRWYNANFQAVQNNFSDYKNELISSHRPEASSLLDFLVKDQKKSGDISLHTKFNLYVD 94

Query: 621 EVLRNADXTKTRR 659
           ++L+ ++  + ++
Sbjct: 95  DLLKKSEKGQIKK 107


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 141 AVGDNKENKPVDDSTTEISNEQEKEK 218
           A+  +  NKP   STT+ SN + K+K
Sbjct: 363 AMAPSASNKPSASSTTKSSNSKSKKK 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,952
Number of Sequences: 5004
Number of extensions: 61631
Number of successful extensions: 232
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)