BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-1004 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 29 0.94 SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 28 1.2 SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 28 1.2 SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 28 1.6 SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 28 1.6 SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 2.9 SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 27 2.9 SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom... 26 5.0 SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 5.0 SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 26 6.6 SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 26 6.6 SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 8.7 SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 8.7 SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 8.7 SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 8.7 >SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizosaccharomyces pombe|chr 1|||Manual Length = 2073 Score = 28.7 bits (61), Expect = 0.94 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = +3 Query: 330 SPVYPTPPKVT-YQKSSNKKKRDYRPIEVSPLARADTEWNGT 452 SPV+ TPP + Y + S DY PI VSP A E GT Sbjct: 1557 SPVFVTPPTNSPYAEVSG----DYNPIHVSPTFAAFVELPGT 1594 >SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr 2|||Manual Length = 680 Score = 28.3 bits (60), Expect = 1.2 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Frame = +3 Query: 138 KAVGDNKENKPVDDSTTEISNEQE----KEKERVLTPLVRQPLEYI 263 KA GD + D S +ISN+Q+ KE+E P++ L+ I Sbjct: 102 KATGDKETEDAKDSSNQDISNDQKAPSFKEQEPATLPILPNDLQSI 147 >SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 420 Score = 28.3 bits (60), Expect = 1.2 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = +1 Query: 148 VITKKTNQWTIAPPRYQTNKRRKKNECSHRWCVSRWST*RRLERNPDIATGNTVRTDK 321 + TK TN I+P + T KR+ K E + + +S R E+ D+ TG+ ++ + Sbjct: 255 LFTKTTNTEKISPTPFSTPKRKSKKETV--FVKAIYSFTGRNEKELDLHTGDVIQVSE 310 >SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1274 Score = 27.9 bits (59), Expect = 1.6 Identities = 14/57 (24%), Positives = 30/57 (52%) Frame = -2 Query: 575 GGALLYVPRVCLGVPALIDLTSSATHARCWGVEIPIVELQSGTVPFGVSSGERTYFY 405 GGA+ VP L L++ TS ++ + C G+ + + L++ P+ ++ ++ Y Sbjct: 491 GGAITSVPPYSLQNSQLMNGTSMSSPSACGGISLILSALKAQKKPYTAAAIKKAVMY 547 >SPAC4G9.04c |||cleavage and polyadenylation specificity factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 638 Score = 27.9 bits (59), Expect = 1.6 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +3 Query: 144 VGDNKENKPVDDSTTEISNEQEKEKERVLTPLVRQPLEYIAAT 272 V +E + ++ EI +++K+ E V + V PL+ IAA+ Sbjct: 474 VNSKEEEDLITETAQEIEEQRQKQMESVRSQYVLTPLDPIAAS 516 >SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1082 Score = 27.1 bits (57), Expect = 2.9 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +1 Query: 433 TPNGTVPLCNSTIGISTPQHRA*VAELVRSIKAGTPRQTRG-T*SRAPPRRKYTNS 597 TP+ T+P NS++ + T + ++ S T T T S P YT+S Sbjct: 539 TPSTTIPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTPALTHSITPSNTSYTSS 594 >SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc7|Schizosaccharomyces pombe|chr 2|||Manual Length = 1062 Score = 27.1 bits (57), Expect = 2.9 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = -2 Query: 533 PALIDLTSSATHARCWGVEIPIVELQSGTVPF 438 P +I+L + T + W V ++EL G P+ Sbjct: 173 PEVIELVGATTASDIWSVGCTVIELLDGNPPY 204 >SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharomyces pombe|chr 2|||Manual Length = 220 Score = 26.2 bits (55), Expect = 5.0 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +3 Query: 153 NKENKPVDDSTTEISNEQEKEKERVLTPLV 242 ++EN ++ S T S E EKEKE + + L+ Sbjct: 112 SEENLKIESSITFTSEEIEKEKENIKSVLL 141 >SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 578 Score = 26.2 bits (55), Expect = 5.0 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +3 Query: 351 PKVTYQKSSNKKKRDYRPIEVSPLARADTEWNGTTLQFYNRNFNS 485 P ++ + S+ P E S A A +N T +YN+N NS Sbjct: 393 PGFSHGRDSSDTSCTESPPEPSHFAWAFDPYNATASPYYNQNINS 437 >SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizosaccharomyces pombe|chr 2|||Manual Length = 778 Score = 25.8 bits (54), Expect = 6.6 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -2 Query: 134 LARFWSYLFFRFDFHFIWF 78 LARF+ +FF F F WF Sbjct: 284 LARFFCLIFFPFLFFLFWF 302 >SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual Length = 341 Score = 25.8 bits (54), Expect = 6.6 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = +3 Query: 318 QGADSPVYPTPPKVTYQKSSNKKKRDYRPIEVSPLARADTEWN 446 + A+SPV PP + Q +S+ +RP+ S +++T N Sbjct: 211 KNANSPV--APPSASSQLNSSNPSSPFRPLSASTDKQSNTSLN 251 >SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytochrome c oxidase assembly protein Cox1101, mitochondrial ribosomal protein Rsm22|Schizosaccharomyces pombe|chr 1|||Manual Length = 753 Score = 25.4 bits (53), Expect = 8.7 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Frame = +3 Query: 450 TTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDT---WDIKQSTASQEIHKLRKLELSYA 620 TT+++YN NF + + S ++ PE + + +K S +I K L Sbjct: 35 TTIRWYNANFQAVQNNFSDYKNELISSHRPEASSLLDFLVKDQKKSGDISLHTKFNLYVD 94 Query: 621 EVLRNADXTKTRR 659 ++L+ ++ + ++ Sbjct: 95 DLLKKSEKGQIKK 107 >SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces pombe|chr 1|||Manual Length = 632 Score = 25.4 bits (53), Expect = 8.7 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = -3 Query: 220 SFSFSCSFDISVVLSSTGLFSLLSPTAFFLL 128 SFS++ S +++SS S+L+ TAF+ + Sbjct: 18 SFSYAFSIKQEIIVSSHNASSILNTTAFWFV 48 >SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion cytochrome c oxidase assembly protein Cox1102, mitochondrial ribosomal protein Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual Length = 753 Score = 25.4 bits (53), Expect = 8.7 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Frame = +3 Query: 450 TTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDT---WDIKQSTASQEIHKLRKLELSYA 620 TT+++YN NF + + S ++ PE + + +K S +I K L Sbjct: 35 TTIRWYNANFQAVQNNFSDYKNELISSHRPEASSLLDFLVKDQKKSGDISLHTKFNLYVD 94 Query: 621 EVLRNADXTKTRR 659 ++L+ ++ + ++ Sbjct: 95 DLLKKSEKGQIKK 107 >SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor complex associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 710 Score = 25.4 bits (53), Expect = 8.7 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 141 AVGDNKENKPVDDSTTEISNEQEKEK 218 A+ + NKP STT+ SN + K+K Sbjct: 363 AMAPSASNKPSASSTTKSSNSKSKKK 388 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,970,952 Number of Sequences: 5004 Number of extensions: 61631 Number of successful extensions: 232 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 217 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 232 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -