Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1004
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98...    28   6.9  
02_02_0106 + 6814391-6817007,6817086-6817462                           28   6.9  
04_04_0475 + 25500470-25500609,25500697-25500794,25502806-255029...    28   9.1  

>10_01_0076 -
           987092-987671,987747-987812,988201-988363,988467-988548,
           989153-989202,989237-989270,990177-990239,990339-990403,
           990485-990560,991274-991353,991514-991628,991729-991830
          Length = 491

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
 Frame = +2

Query: 5   SEQSIPVSDITAPETPTLKEPEXGETR*SESRT-------ERKGNSRNEQEESGG**QRK 163
           +EQ +   D      P  +EP   E R    R        ER  + R  +       +R 
Sbjct: 270 AEQKLSTRDQQHAGRPRSEEPRRDERRADRDREKSRERPRERDRDERTRERSHDRTRERD 329

Query: 164 QTSGR*HHRDIKRTREGKR 220
               R HHRD  RTR+ +R
Sbjct: 330 SKEDRHHHRDRDRTRDRER 348


>02_02_0106 + 6814391-6817007,6817086-6817462
          Length = 997

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 441 WNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWN 536
           WN T L   N  F+ P P+++G+  K+++  N
Sbjct: 458 WNFTRLDISNNRFSGPIPTLAGKM-KVFRAAN 488


>04_04_0475 +
           25500470-25500609,25500697-25500794,25502806-25502915,
           25502998-25503293,25503399-25503474,25503577-25503688,
           25503955-25504004,25504090-25504392,25504446-25504547,
           25505463-25505635,25505745-25505917,25505997-25506106,
           25506180-25506329,25506726-25506881,25507000-25507116,
           25507277-25507474,25507809-25507952
          Length = 835

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 284 QTSQQETQSGPTRRRQPGVSYAAQS 358
           Q  QQ+TQ G  +R+QP  S AA S
Sbjct: 421 QQQQQQTQQGNRKRKQPTSSGAANS 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,940,685
Number of Sequences: 37544
Number of extensions: 434516
Number of successful extensions: 1349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)