Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1004
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 30 1.7
SB_50063| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1) 29 3.0
SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06) 29 3.0
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 29 5.3
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_55108| Best HMM Match : Oxidored_q1_N (HMM E-Value=5.5) 28 7.0
SB_39441| Best HMM Match : SERTA (HMM E-Value=3.4) 28 7.0
SB_51748| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_43258| Best HMM Match : BacA (HMM E-Value=1.8) 28 9.3
SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6) 28 9.3
SB_29061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_910| Best HMM Match : Cation_efflux (HMM E-Value=0.056) 28 9.3
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 31.5 bits (68), Expect = 0.76
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 306 CVSCCDVWISF*SPLCTPAADAPTV*ALVLFPSLVRLISRWCYRPLVC-FLCYHPPLSSC 130
C+ C V++S +C+P FP VR+ S C R C F C+H + C
Sbjct: 942 CLFAC-VYLSV--RVCSPVCSRAFTSLFACFPMSVRVCSPVCSRVFTCLFACFHLSVRVC 998
Query: 129 S 127
S
Sbjct: 999 S 999
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 535 TPRQTRGT*S-RAPPRRKYTNSGSWSYPTPRCSET-PXRLKPGERSINNYFKIIDP 696
+PRQ R + + R+PP R+ + S P+PR T P R P R ++ + ++ P
Sbjct: 547 SPRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSRKSPPPRRVHRHQDVVHP 602
>SB_50063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +3
Query: 438 EWNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDTWDIKQSTASQEIHKLRKLELSY 617
E + T+ F +RN P + + G YQG NP + T E +L+++ELS+
Sbjct: 134 EKSRTSGHFDDRNVRPPNHVIQTKRG--YQGGNPCQSVLVNYKDTRDYETSELKRIELSH 191
Query: 618 AEVLRNADXTKTRRK 662
+V N + K + +
Sbjct: 192 -DVYPNLEQFKNQSR 205
>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
Length = 366
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 8 EQSIPVSDITAPETPTLKEPEXGETR*SESRTERKGNSRNEQEE 139
+Q PV + + E P +EP+ E E +T R R +QEE
Sbjct: 180 KQEQPVEEKSKQEEPVEEEPKQKELVGEEPKTRRTSRRRTKQEE 223
>SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06)
Length = 229
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 465 YNRNFNSPTPSVSGRTGKIYQGWNPETDTWDIKQSTASQEIHKLRKLELSY 617
+ NF P + T K++ W P+T W++K+S H K +L Y
Sbjct: 79 FKSNFTEPFTMAADPT-KMF--WTPDTYFWNVKRSKYHHVTHAYTKNDLDY 126
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = +2
Query: 44 ETPTLKEPEXGETR*SESRTERKGNSRNEQEESGG**QRKQTS---GR*HHRDIKRTREG 214
E P K P +++ +R+ RK NS + +S +RK+ S R R R
Sbjct: 769 EDPKEKSPPLPKSKKMANRSYRKHNSSESESDSDSPPERKKGSVSPRDQRRRSPMRRRRS 828
Query: 215 KRTSAHTVGASAAGVHSGD*KEIQTSQQETQSGPTRRRQ 331
+ S SA+G S + ++ + + P RR+
Sbjct: 829 RDASPRRRRRSASGSDSSPHRRSESPRDRRRRSPEHRRR 867
>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 230 HTVGASAAGVHSGD*KEIQTSQQETQSGPTRRRQP 334
H V S+ GVH+G K +ETQS RRRQP
Sbjct: 486 HRVFGSSPGVHTGWTKY---KDKETQSQDVRRRQP 517
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 179 IVHWFVFFVITHRFLLARFWSYLFFRFDFHFIWF 78
I H F F +ITH F + + FF H +F
Sbjct: 969 ITHHFFFSIITHHFFFSIITHHFFFSIITHHYFF 1002
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 179 IVHWFVFFVITHRFLLARFWSYLFFRFDFHFIWF 78
I H F F +ITH F + + FF H +F
Sbjct: 978 ITHHFFFSIITHHFFFSIITHHYFFSIITHHFFF 1011
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 179 IVHWFVFFVITHRFLLARFWSYLFFRFDFHFIWF 78
I H ++F +ITH + + + FF H +F
Sbjct: 951 ITHHYIFSIITHHYFFSIITHHFFFSIITHHFFF 984
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 179 IVHWFVFFVITHRFLLARFWSYLFFRFDFHFIWF 78
I H F F +ITH F + + FF H +F
Sbjct: 1005 ITHHFFFSIITHHFFFSIITHHYFFSIITHHYFF 1038
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 179 IVHWFVFFVITHRFLLARFWSYLFFRFDFHFIWF 78
I H + F +ITH F + + FF H +F
Sbjct: 960 ITHHYFFSIITHHFFFSIITHHFFFSIITHHFFF 993
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 179 IVHWFVFFVITHRFLLARFWSYLFFRFDFHFIWF 78
I H F F +ITH + + + FF H +F
Sbjct: 987 ITHHFFFSIITHHYFFSIITHHFFFSIITHHFFF 1020
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 312 DRQGADSPVYPTPPKVTYQKSSNKKKRDYR 401
D GA+ V PTPP T + +SN+K R R
Sbjct: 1290 DNLGAEE-VLPTPPSPTLEPASNRKPRGRR 1318
>SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 28.7 bits (61), Expect = 5.3
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Frame = +3
Query: 327 DSPVYPTPPKVTYQKSSNKKKRDYRPIEVSPLARADTEWNGTTLQFYNRNFNSPTPSVSG 506
DSP PP+ S +K RP+E S + + T+ + + P P V
Sbjct: 442 DSPPTRQPPEQQRVDSKTRKLFTGRPLETSDSTELELSVD-TSASNSTTHSSLPPPRVDS 500
Query: 507 RTGKIYQG---WNPETDTWDIKQSTASQEIHKLRKLELSYAEVLRNAD-XTKTRRK 662
RT I+ G T T S+ + L LS+ + + D TKT ++
Sbjct: 501 RTNHIHMGRPAGGRATSTESESYSSGDELSSSLSSDALSFEAMKKRKDLATKTLQR 556
>SB_55108| Best HMM Match : Oxidored_q1_N (HMM E-Value=5.5)
Length = 377
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -1
Query: 321 LVGPDCVSCCDVWISF*SPLCTPAADAPTV*ALVLFPSLVRLISRWCYRPLVCFL 157
+ G +C+ + + + + TP P V AL + PS + ++ WC V F+
Sbjct: 68 IFGTECMEPPFPFYVYNNTIYTPVLLVPKVTALAVMPSALEVVPLWCNPFFVSFV 122
>SB_39441| Best HMM Match : SERTA (HMM E-Value=3.4)
Length = 463
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 372 SSNKKKRDYRPIEVSPLARADTEWNGTTLQFYNRNFNSPTPSVSGRTGKIYQG 530
+++KK + RP + + L++A W+ YN+ +S SV G +G
Sbjct: 127 TTDKKLFEARPAKRTKLSKARGNWSNKEANSYNKRADSINESVQASEGICMEG 179
>SB_51748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = -1
Query: 261 CTPAADAPTV*ALVLFPSLVRLISRWCYRPLVCFLCYHPPLSSC 130
CTP P L L P L+ R L C L PL +C
Sbjct: 6 CTPVYQPPNATVLTLTPLKKSLVDLTWIRTLDCLLQKRSPLRNC 49
>SB_43258| Best HMM Match : BacA (HMM E-Value=1.8)
Length = 215
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 407 YRPIITFLLVR*FLISYFGRRRIHRAVGALSVLTVFPVAMSGFLS 273
+ P I L R + +GRR++ +G+L V FP+ ++ LS
Sbjct: 77 FTPFIGILCDR--TVCQYGRRKLWHLIGSLLVTITFPLLLTRLLS 119
>SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6)
Length = 184
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = +3
Query: 339 YPTPPKVTYQKSSNKKKRDYRPIEVSPLARADTEWNGTTLQFYNRNFNSPTPSVSGRTGK 518
YP PP+ RD R I P +R + G L R+ P P GR +
Sbjct: 23 YPPPPRDERDSRGPPPPRDGRDIRGLPPSRDGRDIRGLPLPRDGRDSRGPPPPRDGRDSR 82
>SB_29061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -2
Query: 431 SSGERTYFYRPIITFLLVR*FLISYFGRRRIHRAVGALSVLTVFPVAMSGFLSSRRYVLQ 252
S G + + Y I+ L F I +R HR + AL+ L + +A+S L + + +
Sbjct: 25 SRGGKVFAYVFILAIALAGNFFI-ILAMKREHRRLRALTYLLITSIAVSDLLMAAWSIPE 83
Query: 251 RLT 243
R+T
Sbjct: 84 RIT 86
>SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 206 REGKRTSAHTVGASAAGVHSGD 271
REG RTSA+++G A G GD
Sbjct: 287 REGVRTSANSLGPGAPGCEMGD 308
>SB_910| Best HMM Match : Cation_efflux (HMM E-Value=0.056)
Length = 416
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 141 AVGDNKENKPVDDSTTEISNEQEKEKER 224
A GD +NK +D E+E+EKER
Sbjct: 284 ASGDENDNKLKEDELQRSKREREREKER 311
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,807,582
Number of Sequences: 59808
Number of extensions: 492935
Number of successful extensions: 1733
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1730
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -