Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1004
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK027622-1|BAB55241.1| 396|Homo sapiens protein ( Homo sapiens ... 31 3.3
M73837-1|AAA59870.1| 246|Homo sapiens modulator recognition fac... 31 5.8
AY679523-1|AAT74623.1| 1512|Homo sapiens cell division cycle 2-l... 31 5.8
AL671972-2|CAH72686.1| 1188|Homo sapiens modulator recognition f... 31 5.8
AL671972-1|CAH72685.1| 945|Homo sapiens modulator recognition f... 31 5.8
AJ297710-1|CAC10401.1| 1452|Homo sapiens CDC2L5 protein kinase p... 31 5.8
AJ297709-1|CAC10400.1| 1512|Homo sapiens CDC2L5 protein kinase p... 31 5.8
AC072061-1|AAS07491.1| 784|Homo sapiens unknown protein. 31 5.8
>AK027622-1|BAB55241.1| 396|Homo sapiens protein ( Homo sapiens
cDNA FLJ14716 fis, clone NT2RP3001150, weakly similar to
TRANSCRIPTION TERMINATION FACTOR RHO. ).
Length = 396
Score = 31.5 bits (68), Expect = 3.3
Identities = 26/98 (26%), Positives = 41/98 (41%)
Frame = +2
Query: 38 APETPTLKEPEXGETR*SESRTERKGNSRNEQEESGG**QRKQTSGR*HHRDIKRTREGK 217
+P T+K + E R +R+ +EQE +R + S R HR R
Sbjct: 99 SPHHSTVKVKQEREDHPRRGREDRQHREPSEQEH-----RRARNSDRDRHRGHSHQR--- 150
Query: 218 RTSAHTVGASAAGVHSGD*KEIQTSQQETQSGPTRRRQ 331
RTS G+ D + +Q ++E +S RRR+
Sbjct: 151 RTSNERPGSGQGQGRDRDTQNLQAQEEERESYNARRRE 188
>M73837-1|AAA59870.1| 246|Homo sapiens modulator recognition factor
2 protein.
Length = 246
Score = 30.7 bits (66), Expect = 5.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 156 KENKPVDDSTTEISNEQEKEKERVLT 233
KEN P E+S+EQEKE+E +++
Sbjct: 154 KENAPKPQDAAEVSSEQEKEQETLIS 179
>AY679523-1|AAT74623.1| 1512|Homo sapiens cell division cycle 2-like
5 (cholinesterase-related cell division controller)
protein.
Length = 1512
Score = 30.7 bits (66), Expect = 5.8
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +2
Query: 89 SESRTERKGNSRNEQEESGG**QRKQTSGR*--HHRDIKRTREGKRTSAHTVGASAAGVH 262
S S T+R+G + R+ +SGR HR+ +R R+G+R + + + H
Sbjct: 183 SSSGTQRRGEGSERRPRR----DRRSSSGRSKERHREHRR-RDGQRGGSEASKSRSRHSH 237
Query: 263 SGD*K-EIQTSQQETQSGPTRRRQPGVSYAAQS 358
SG+ + E+ S + SG R+ S ++ S
Sbjct: 238 SGEERAEVAKSGSSSSSGGRRKSASATSSSSSS 270
>AL671972-2|CAH72686.1| 1188|Homo sapiens modulator recognition
factor 2 (MRF2) protein.
Length = 1188
Score = 30.7 bits (66), Expect = 5.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 156 KENKPVDDSTTEISNEQEKEKERVLT 233
KEN P E+S+EQEKE+E +++
Sbjct: 455 KENAPKPQDAAEVSSEQEKEQETLIS 480
>AL671972-1|CAH72685.1| 945|Homo sapiens modulator recognition
factor 2 (MRF2) protein.
Length = 945
Score = 30.7 bits (66), Expect = 5.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 156 KENKPVDDSTTEISNEQEKEKERVLT 233
KEN P E+S+EQEKE+E +++
Sbjct: 212 KENAPKPQDAAEVSSEQEKEQETLIS 237
>AJ297710-1|CAC10401.1| 1452|Homo sapiens CDC2L5 protein kinase
protein.
Length = 1452
Score = 30.7 bits (66), Expect = 5.8
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +2
Query: 89 SESRTERKGNSRNEQEESGG**QRKQTSGR*--HHRDIKRTREGKRTSAHTVGASAAGVH 262
S S T+R+G + R+ +SGR HR+ +R R+G+R + + + H
Sbjct: 183 SSSGTQRRGEGSERRPRR----DRRSSSGRSKERHREHRR-RDGQRGGSEASKSRSRHSH 237
Query: 263 SGD*K-EIQTSQQETQSGPTRRRQPGVSYAAQS 358
SG+ + E+ S + SG R+ S ++ S
Sbjct: 238 SGEERAEVAKSGSSSSSGGRRKSASATSSSSSS 270
>AJ297709-1|CAC10400.1| 1512|Homo sapiens CDC2L5 protein kinase
protein.
Length = 1512
Score = 30.7 bits (66), Expect = 5.8
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +2
Query: 89 SESRTERKGNSRNEQEESGG**QRKQTSGR*--HHRDIKRTREGKRTSAHTVGASAAGVH 262
S S T+R+G + R+ +SGR HR+ +R R+G+R + + + H
Sbjct: 183 SSSGTQRRGEGSERRPRR----DRRSSSGRSKERHREHRR-RDGQRGGSEASKSRSRHSH 237
Query: 263 SGD*K-EIQTSQQETQSGPTRRRQPGVSYAAQS 358
SG+ + E+ S + SG R+ S ++ S
Sbjct: 238 SGEERAEVAKSGSSSSSGGRRKSASATSSSSSS 270
>AC072061-1|AAS07491.1| 784|Homo sapiens unknown protein.
Length = 784
Score = 30.7 bits (66), Expect = 5.8
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +2
Query: 89 SESRTERKGNSRNEQEESGG**QRKQTSGR*--HHRDIKRTREGKRTSAHTVGASAAGVH 262
S S T+R+G + R+ +SGR HR+ +R R+G+R + + + H
Sbjct: 183 SSSGTQRRGEGSERRPRR----DRRSSSGRSKERHREHRR-RDGQRGGSEASKSRSRHSH 237
Query: 263 SGD*K-EIQTSQQETQSGPTRRRQPGVSYAAQS 358
SG+ + E+ S + SG R+ S ++ S
Sbjct: 238 SGEERAEVAKSGSSSSSGGRRKSASATSSSSSS 270
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,518,466
Number of Sequences: 237096
Number of extensions: 2409232
Number of successful extensions: 7130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7124
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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