Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1004
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051930-1|AAK93354.1|  790|Drosophila melanogaster LD41224p pro...    57   3e-08
AE014134-3268|AAN11084.1|  790|Drosophila melanogaster CG1962-PC...    57   3e-08
AE014134-3267|AAN11083.1|  790|Drosophila melanogaster CG1962-PB...    57   3e-08
AE014134-3266|AAF53912.1|  790|Drosophila melanogaster CG1962-PA...    57   3e-08
BT021226-1|AAX33374.1|  355|Drosophila melanogaster RH50989p pro...    31   1.7  
AE014298-1375|AAF46526.1|  355|Drosophila melanogaster CG15247-P...    31   1.7  
AY060329-1|AAL25368.1|  654|Drosophila melanogaster GH21837p pro...    30   3.9  
AE013599-922|AAF58902.2|  654|Drosophila melanogaster CG1698-PA ...    30   3.9  
AY071487-1|AAL49109.1|  153|Drosophila melanogaster RE55472p pro...    29   8.9  
AF435839-1|AAL30824.1|  567|Drosophila melanogaster suppressor o...    29   8.9  
AE014297-2329|AAF55399.1|  153|Drosophila melanogaster CG12265-P...    29   8.9  
AE014135-30|ABC65827.1| 4056|Drosophila melanogaster CG33978-PA ...    29   8.9  

>AY051930-1|AAK93354.1|  790|Drosophila melanogaster LD41224p
           protein.
          Length = 790

 Score = 56.8 bits (131), Expect = 3e-08
 Identities = 29/71 (40%), Positives = 44/71 (61%)
 Frame = +3

Query: 429 ADTEWNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDTWDIKQSTASQEIHKLRKLE 608
           + + WNG+ +  YN+N N+P  S     G++      E +  +   +T SQ++HKL+KL+
Sbjct: 697 SSSNWNGSPMVIYNKNMNTPQTS----RGRVI-----ELNGVEFYHNTVSQDLHKLKKLD 747

Query: 609 LSYAEVLRNAD 641
           LSYAEVLR AD
Sbjct: 748 LSYAEVLRRAD 758


>AE014134-3268|AAN11084.1|  790|Drosophila melanogaster CG1962-PC,
           isoform C protein.
          Length = 790

 Score = 56.8 bits (131), Expect = 3e-08
 Identities = 29/71 (40%), Positives = 44/71 (61%)
 Frame = +3

Query: 429 ADTEWNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDTWDIKQSTASQEIHKLRKLE 608
           + + WNG+ +  YN+N N+P  S     G++      E +  +   +T SQ++HKL+KL+
Sbjct: 697 SSSNWNGSPMVIYNKNMNTPQTS----RGRVI-----ELNGVEFYHNTVSQDLHKLKKLD 747

Query: 609 LSYAEVLRNAD 641
           LSYAEVLR AD
Sbjct: 748 LSYAEVLRRAD 758


>AE014134-3267|AAN11083.1|  790|Drosophila melanogaster CG1962-PB,
           isoform B protein.
          Length = 790

 Score = 56.8 bits (131), Expect = 3e-08
 Identities = 29/71 (40%), Positives = 44/71 (61%)
 Frame = +3

Query: 429 ADTEWNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDTWDIKQSTASQEIHKLRKLE 608
           + + WNG+ +  YN+N N+P  S     G++      E +  +   +T SQ++HKL+KL+
Sbjct: 697 SSSNWNGSPMVIYNKNMNTPQTS----RGRVI-----ELNGVEFYHNTVSQDLHKLKKLD 747

Query: 609 LSYAEVLRNAD 641
           LSYAEVLR AD
Sbjct: 748 LSYAEVLRRAD 758


>AE014134-3266|AAF53912.1|  790|Drosophila melanogaster CG1962-PA,
           isoform A protein.
          Length = 790

 Score = 56.8 bits (131), Expect = 3e-08
 Identities = 29/71 (40%), Positives = 44/71 (61%)
 Frame = +3

Query: 429 ADTEWNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDTWDIKQSTASQEIHKLRKLE 608
           + + WNG+ +  YN+N N+P  S     G++      E +  +   +T SQ++HKL+KL+
Sbjct: 697 SSSNWNGSPMVIYNKNMNTPQTS----RGRVI-----ELNGVEFYHNTVSQDLHKLKKLD 747

Query: 609 LSYAEVLRNAD 641
           LSYAEVLR AD
Sbjct: 748 LSYAEVLRRAD 758


>BT021226-1|AAX33374.1|  355|Drosophila melanogaster RH50989p
           protein.
          Length = 355

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 327 DSPVYPTPPKVTYQKSSN---KKKRDYRPIEVSPLAR 428
           D PVYPTPP  +   SS+   ++KR YR  + S L R
Sbjct: 173 DLPVYPTPPSTSTLNSSSSGPREKRRYRRSQSSILER 209


>AE014298-1375|AAF46526.1|  355|Drosophila melanogaster CG15247-PA
           protein.
          Length = 355

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 327 DSPVYPTPPKVTYQKSSN---KKKRDYRPIEVSPLAR 428
           D PVYPTPP  +   SS+   ++KR YR  + S L R
Sbjct: 173 DLPVYPTPPSTSTLNSSSSGPREKRRYRRSQSSILER 209


>AY060329-1|AAL25368.1|  654|Drosophila melanogaster GH21837p
           protein.
          Length = 654

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -2

Query: 653 GFSLIGVSEHLGVG*LQLPEFVYFLRGGALLY-VPRVCLGVPALIDLTSSATHARCWGVE 477
           G  L+ + ++ GV  + L   ++ L   A +Y V R+C  V  +I + +S  +  CW V 
Sbjct: 480 GQFLLNLVDYFGVTFVALVLAIFELVTIAWIYGVKRLCRDVEFMIGIKTSLYYRICWAVV 539

Query: 476 IPIVEL 459
            P++ L
Sbjct: 540 TPLLML 545


>AE013599-922|AAF58902.2|  654|Drosophila melanogaster CG1698-PA
           protein.
          Length = 654

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -2

Query: 653 GFSLIGVSEHLGVG*LQLPEFVYFLRGGALLY-VPRVCLGVPALIDLTSSATHARCWGVE 477
           G  L+ + ++ GV  + L   ++ L   A +Y V R+C  V  +I + +S  +  CW V 
Sbjct: 480 GQFLLNLVDYFGVTFVALVLAIFELVTIAWIYGVKRLCRDVEFMIGIKTSLYYRICWAVV 539

Query: 476 IPIVEL 459
            P++ L
Sbjct: 540 TPLLML 545


>AY071487-1|AAL49109.1|  153|Drosophila melanogaster RE55472p
           protein.
          Length = 153

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 411 VSPLARADTEWNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDTW 554
           +S +A A   W GT      R  ++ T  V G+T     GW PE D W
Sbjct: 48  ISKMAEAGFYWTGT-----KRENDTATCFVCGKT---LDGWEPEDDPW 87


>AF435839-1|AAL30824.1|  567|Drosophila melanogaster suppressor of
           cytokine signalingSOCS36E-II protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 235 RWCVSRWST*RRLERNPDIATGNTVRTDKAPTARCILRRPK*LIRNHRTR 384
           RW  +R ST  R ++NP+  T    +T+  P  RC   + K   R+H T+
Sbjct: 480 RWTATRRSTCSRGKQNPETKT----QTETIPVQRCRHHKLKDQTRSHITK 525


>AE014297-2329|AAF55399.1|  153|Drosophila melanogaster CG12265-PA
           protein.
          Length = 153

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 411 VSPLARADTEWNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDTW 554
           +S +A A   W GT      R  ++ T  V G+T     GW PE D W
Sbjct: 48  ISKMAEAGFYWTGT-----KRENDTATCFVCGKT---LDGWEPEDDPW 87


>AE014135-30|ABC65827.1| 4056|Drosophila melanogaster CG33978-PA
            protein.
          Length = 4056

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 150  DNKENKPVDDSTTEISNEQEKEKERVLTPLVR 245
            D K  KP  D+T  +SN   +  +R   P++R
Sbjct: 1316 DQKNTKPESDNTDGLSNHSPQNAKRPFAPVIR 1347


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,868,446
Number of Sequences: 53049
Number of extensions: 719906
Number of successful extensions: 2472
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2461
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)