BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-1004 (750 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppress... 31 1.2 U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein. 31 1.2 S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein. 31 1.2 Z69646-8|CAA93477.3| 896|Caenorhabditis elegans Hypothetical pr... 29 4.7 Z50794-7|CAA90661.3| 896|Caenorhabditis elegans Hypothetical pr... 29 4.7 AL110484-27|CAI46626.1| 397|Caenorhabditis elegans Hypothetical... 28 6.2 AF003136-3|AAO38651.1| 352|Caenorhabditis elegans Hypothetical ... 28 6.2 AF003136-2|AAK93851.1| 468|Caenorhabditis elegans Hypothetical ... 28 6.2 AF022982-3|AAB69932.1| 670|Caenorhabditis elegans Hypothetical ... 28 8.1 >U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppressor of activatedras protein 1 protein. Length = 771 Score = 30.7 bits (66), Expect = 1.2 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = +3 Query: 429 ADTEWNGTTLQFYNRNFNSPTPSVS-GRTGKIYQGWN 536 A WN T+QF F+ P + GR GK+ +G++ Sbjct: 460 AQASWNEVTIQFETIEFDKQAPIIGRGRFGKVLRGFH 496 >U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein. Length = 771 Score = 30.7 bits (66), Expect = 1.2 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = +3 Query: 429 ADTEWNGTTLQFYNRNFNSPTPSVS-GRTGKIYQGWN 536 A WN T+QF F+ P + GR GK+ +G++ Sbjct: 460 AQASWNEVTIQFETIEFDKQAPIIGRGRFGKVLRGFH 496 >S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein. Length = 771 Score = 30.7 bits (66), Expect = 1.2 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = +3 Query: 429 ADTEWNGTTLQFYNRNFNSPTPSVS-GRTGKIYQGWN 536 A WN T+QF F+ P + GR GK+ +G++ Sbjct: 460 AQASWNEVTIQFETIEFDKQAPIIGRGRFGKVLRGFH 496 >Z69646-8|CAA93477.3| 896|Caenorhabditis elegans Hypothetical protein F59F5.7 protein. Length = 896 Score = 28.7 bits (61), Expect = 4.7 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Frame = +3 Query: 138 KAVGDNKENKPVDDSTTEISNEQEKEKERVLTPLVRQPLEYIAATXXXXXXXXXXXXQDR 317 K V +NKENK +D I ++KEK ++ V L+ ++ +D Sbjct: 361 KKVFENKENKNIDPLALPIPEPEKKEK---VSKEVENTLKLLSTMPDEQRKMLESAIKDG 417 Query: 318 Q-GADSPVYPTPPKVTYQKSSNKKK 389 + ADSP+ K + S K+K Sbjct: 418 EIDADSPLIKNLVKNDVTEESKKEK 442 >Z50794-7|CAA90661.3| 896|Caenorhabditis elegans Hypothetical protein F59F5.7 protein. Length = 896 Score = 28.7 bits (61), Expect = 4.7 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Frame = +3 Query: 138 KAVGDNKENKPVDDSTTEISNEQEKEKERVLTPLVRQPLEYIAATXXXXXXXXXXXXQDR 317 K V +NKENK +D I ++KEK ++ V L+ ++ +D Sbjct: 361 KKVFENKENKNIDPLALPIPEPEKKEK---VSKEVENTLKLLSTMPDEQRKMLESAIKDG 417 Query: 318 Q-GADSPVYPTPPKVTYQKSSNKKK 389 + ADSP+ K + S K+K Sbjct: 418 EIDADSPLIKNLVKNDVTEESKKEK 442 >AL110484-27|CAI46626.1| 397|Caenorhabditis elegans Hypothetical protein Y38E10A.28 protein. Length = 397 Score = 28.3 bits (60), Expect = 6.2 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +3 Query: 474 NFNSPTPSVSGRTGKIYQGWNPETDTWDIKQSTASQEIHKL 596 NF+ P VSG + WN +T W+I +S A E+ +L Sbjct: 358 NFSCVHP-VSGLQWNGRKIWNGKTGKWEIDESPAEHEVFEL 397 >AF003136-3|AAO38651.1| 352|Caenorhabditis elegans Hypothetical protein F28B3.5b protein. Length = 352 Score = 28.3 bits (60), Expect = 6.2 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +3 Query: 138 KAVGDNKENKPVDDSTTEISNEQEKEKERVLT 233 K + +E+K D I EQEKEKE LT Sbjct: 197 KITNNRQEDKEQGDREVLIEKEQEKEKEHQLT 228 >AF003136-2|AAK93851.1| 468|Caenorhabditis elegans Hypothetical protein F28B3.5a protein. Length = 468 Score = 28.3 bits (60), Expect = 6.2 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +3 Query: 138 KAVGDNKENKPVDDSTTEISNEQEKEKERVLT 233 K + +E+K D I EQEKEKE LT Sbjct: 197 KITNNRQEDKEQGDREVLIEKEQEKEKEHQLT 228 >AF022982-3|AAB69932.1| 670|Caenorhabditis elegans Hypothetical protein T23B12.6 protein. Length = 670 Score = 27.9 bits (59), Expect = 8.1 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Frame = -2 Query: 557 VPRVCLGVPALIDLTSSATHARCWGVE--IPIVELQSGTVP 441 V RV L LI + S H R W V ++ Q GTVP Sbjct: 444 VQRVSLNTSHLISVCSEYNHVRSWNVTRFRGMINTQPGTVP 484 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,643,289 Number of Sequences: 27780 Number of extensions: 360406 Number of successful extensions: 1295 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1199 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1293 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1777507862 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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