Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1004
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 540 ETDTWDIKQSTASQEI 587
           ETD W+++Q  A +EI
Sbjct: 240 ETDIWEVEQILAKKEI 255


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 567 SALCPTCLSRGSSLDRSYQFGHSRSVLGS*NSYCRIAK 454
           S   P  + R S  + SY    SRS+    + YC I K
Sbjct: 54  SMTIPPSIDRSSIHEESYLAESSRSIDPCASKYCGIGK 91


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 488 WGVEIPIVELQSGTVPFGVSSGERTY 411
           W + + + EL +GT PF      +TY
Sbjct: 549 WSLGVLMFELLTGTPPFTGGDPMKTY 574


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 294 CDVWISF*SPLCT 256
           CD+W+SF    CT
Sbjct: 114 CDLWVSFDVLSCT 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,145
Number of Sequences: 438
Number of extensions: 4810
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)