BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-1004 (750 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g27860.1 68415.m03377 expressed protein 31 0.62 At1g08200.1 68414.m00906 expressed protein 31 0.82 At3g53380.1 68416.m05891 lectin protein kinase family protein co... 30 1.4 At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 29 2.5 At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 29 2.5 At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 29 2.5 At4g32630.1 68417.m04645 hypothetical protein 29 2.5 At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 29 4.4 At1g07460.1 68414.m00796 legume lectin family protein contains L... 29 4.4 At4g00640.1 68417.m00088 hypothetical protein 28 7.6 At1g11310.1 68414.m01299 seven transmembrane MLO family protein ... 28 7.6 >At2g27860.1 68415.m03377 expressed protein Length = 389 Score = 31.5 bits (68), Expect = 0.62 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Frame = +3 Query: 459 QFYNRNFNSPTPSVSGRTGKIYQ-GWNPETDTWDIKQSTASQEIHKLRKLELSYAEVLRN 635 +FY ++ + T Q GWNP+T WD+ +ST + + H+ +YAE ++ Sbjct: 329 EFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQ-HR------TYAEAVKK 381 Query: 636 A 638 A Sbjct: 382 A 382 >At1g08200.1 68414.m00906 expressed protein Length = 389 Score = 31.1 bits (67), Expect = 0.82 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +3 Query: 459 QFYNRNFNSPTPSVSGRTGKIYQ-GWNPETDTWDIKQSTASQEIHKLRKLELSYAEVLRN 635 +FY ++ + T Q GWNP+T WD+ +ST + + +YAE ++ Sbjct: 329 EFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQ-------HTTYAEAIKK 381 Query: 636 A 638 A Sbjct: 382 A 382 >At3g53380.1 68416.m05891 lectin protein kinase family protein contains Pfam domains, PF00069: Protein kinase domain, PF00138: Legume lectins alpha domain, and PF00139: Legume lectins beta domain Length = 715 Score = 30.3 bits (65), Expect = 1.4 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 3/102 (2%) Frame = +3 Query: 375 SNKKKRDYRPIE-VSPLARADTEWNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWNPET-D 548 S K KR R S + +A E++ L+ +NFN G G +Y+G PET D Sbjct: 341 SKKFKRVERSDSFASEIIKAPKEFSYKELKAGTKNFNESRIIGHGAFGVVYRGILPETGD 400 Query: 549 TWDIKQSTASQEIHKLRKL-ELSYAEVLRNADXTKTRRKKHQ 671 +K+ + S + K L ELS LR+ + + + H+ Sbjct: 401 IVAVKRCSHSSQDKKNEFLSELSIIGSLRHRNLVRLQGWCHE 442 >At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 460 Score = 29.5 bits (63), Expect = 2.5 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +3 Query: 480 NSPTPSVSGRTGKIYQGWNPETD-TWDIKQSTASQEIHKLRKLELSYAEVLRN 635 +SP G G++Y+G + +D TW +Q SQ H+L L +Y + N Sbjct: 367 SSPFNGFEGSIGELYRGGSVYSDSTWQ-QQQLPSQSSHELDNLSRAYGYDIDN 418 >At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 460 Score = 29.5 bits (63), Expect = 2.5 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +3 Query: 480 NSPTPSVSGRTGKIYQGWNPETD-TWDIKQSTASQEIHKLRKLELSYAEVLRN 635 +SP G G++Y+G + +D TW +Q SQ H+L L +Y + N Sbjct: 367 SSPFNGFEGSIGELYRGGSVYSDSTWQ-QQQLPSQSSHELDNLSRAYGYDIDN 418 >At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 448 Score = 29.5 bits (63), Expect = 2.5 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +3 Query: 480 NSPTPSVSGRTGKIYQGWNPETD-TWDIKQSTASQEIHKLRKLELSYAEVLRN 635 +SP G G++Y+G + +D TW +Q SQ H+L L +Y + N Sbjct: 367 SSPFNGFEGSIGELYRGGSVYSDSTWQ-QQQLPSQSSHELDNLSRAYGYDIDN 418 >At4g32630.1 68417.m04645 hypothetical protein Length = 531 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = +2 Query: 206 REGKRTSAHTVGASAAGVHSGD*KEIQTSQQETQSG 313 RE K+TSAH +G+ + +HS D +I+ S +SG Sbjct: 125 RESKKTSAHVLGSRS--LHSVDKSDIERSSAAGRSG 158 >At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein similar to SP|O60841 Translation initiation factor IF-2 {Homo sapiens}; contains Pfam profiles PF00009: Elongation factor Tu GTP binding domain, PF03144: Elongation factor Tu domain 2 Length = 1201 Score = 28.7 bits (61), Expect = 4.4 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +3 Query: 132 KKKAVGDNKENKPVDDSTTEISNEQEKEKERVLTPL 239 KKK +KE K +T+ + ++EK++E V PL Sbjct: 311 KKKKKEKDKEKKAAAAATSSVEAKEEKQEESVTEPL 346 >At1g07460.1 68414.m00796 legume lectin family protein contains Legume lectins beta-chain signature, PROSITE:PS00307 Length = 258 Score = 28.7 bits (61), Expect = 4.4 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -3 Query: 229 STRSFSFSCSFDISVVLSSTGLFSLLSPTAFF 134 S+ SFSFS SF S+ GL L+SP+ F Sbjct: 18 SSNSFSFSTSFVFSIDAPGHGLTFLISPSMDF 49 >At4g00640.1 68417.m00088 hypothetical protein Length = 425 Score = 27.9 bits (59), Expect = 7.6 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +3 Query: 150 DNKENKPVDDSTTEISNEQEKEKERVLT 233 DN+ KP D E E EK K VLT Sbjct: 314 DNENGKPTADFAKEAEGEAEKSKNVVLT 341 >At1g11310.1 68414.m01299 seven transmembrane MLO family protein / MLO-like protein 2 (MLO2) idenctical to membrane protein Mlo2 [Arabidopsis thaliana] gi|14091574|gb|AAK53795; similar to Mlo [Hordeum vulgare subsp. vulgare] gi|1877221|emb|CAB06083 SWISS-PROT:P93766 Length = 573 Score = 27.9 bits (59), Expect = 7.6 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = +3 Query: 480 NSPTPSVSGRTGKIYQGWNPETDTWDIKQSTASQEIHKLRKLELSYAEV 626 +SP+P SG +Q W+PE+ + + ST H+ + L+ E+ Sbjct: 509 SSPSPRYSGHGHHEHQFWDPESQHQEAETSTHHSLAHESSEPVLASVEL 557 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,769,527 Number of Sequences: 28952 Number of extensions: 336883 Number of successful extensions: 1233 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1230 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1663169840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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