Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1004
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27860.1 68415.m03377 expressed protein 31 0.62
At1g08200.1 68414.m00906 expressed protein 31 0.82
At3g53380.1 68416.m05891 lectin protein kinase family protein co... 30 1.4
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 29 2.5
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 29 2.5
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 29 2.5
At4g32630.1 68417.m04645 hypothetical protein 29 2.5
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 29 4.4
At1g07460.1 68414.m00796 legume lectin family protein contains L... 29 4.4
At4g00640.1 68417.m00088 hypothetical protein 28 7.6
At1g11310.1 68414.m01299 seven transmembrane MLO family protein ... 28 7.6
>At2g27860.1 68415.m03377 expressed protein
Length = 389
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 459 QFYNRNFNSPTPSVSGRTGKIYQ-GWNPETDTWDIKQSTASQEIHKLRKLELSYAEVLRN 635
+FY ++ + T Q GWNP+T WD+ +ST + + H+ +YAE ++
Sbjct: 329 EFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQ-HR------TYAEAVKK 381
Query: 636 A 638
A
Sbjct: 382 A 382
>At1g08200.1 68414.m00906 expressed protein
Length = 389
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 459 QFYNRNFNSPTPSVSGRTGKIYQ-GWNPETDTWDIKQSTASQEIHKLRKLELSYAEVLRN 635
+FY ++ + T Q GWNP+T WD+ +ST + + +YAE ++
Sbjct: 329 EFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQ-------HTTYAEAIKK 381
Query: 636 A 638
A
Sbjct: 382 A 382
>At3g53380.1 68416.m05891 lectin protein kinase family protein
contains Pfam domains, PF00069: Protein kinase domain,
PF00138: Legume lectins alpha domain, and PF00139:
Legume lectins beta domain
Length = 715
Score = 30.3 bits (65), Expect = 1.4
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Frame = +3
Query: 375 SNKKKRDYRPIE-VSPLARADTEWNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWNPET-D 548
S K KR R S + +A E++ L+ +NFN G G +Y+G PET D
Sbjct: 341 SKKFKRVERSDSFASEIIKAPKEFSYKELKAGTKNFNESRIIGHGAFGVVYRGILPETGD 400
Query: 549 TWDIKQSTASQEIHKLRKL-ELSYAEVLRNADXTKTRRKKHQ 671
+K+ + S + K L ELS LR+ + + + H+
Sbjct: 401 IVAVKRCSHSSQDKKNEFLSELSIIGSLRHRNLVRLQGWCHE 442
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 480 NSPTPSVSGRTGKIYQGWNPETD-TWDIKQSTASQEIHKLRKLELSYAEVLRN 635
+SP G G++Y+G + +D TW +Q SQ H+L L +Y + N
Sbjct: 367 SSPFNGFEGSIGELYRGGSVYSDSTWQ-QQQLPSQSSHELDNLSRAYGYDIDN 418
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 480 NSPTPSVSGRTGKIYQGWNPETD-TWDIKQSTASQEIHKLRKLELSYAEVLRN 635
+SP G G++Y+G + +D TW +Q SQ H+L L +Y + N
Sbjct: 367 SSPFNGFEGSIGELYRGGSVYSDSTWQ-QQQLPSQSSHELDNLSRAYGYDIDN 418
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 480 NSPTPSVSGRTGKIYQGWNPETD-TWDIKQSTASQEIHKLRKLELSYAEVLRN 635
+SP G G++Y+G + +D TW +Q SQ H+L L +Y + N
Sbjct: 367 SSPFNGFEGSIGELYRGGSVYSDSTWQ-QQQLPSQSSHELDNLSRAYGYDIDN 418
>At4g32630.1 68417.m04645 hypothetical protein
Length = 531
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 206 REGKRTSAHTVGASAAGVHSGD*KEIQTSQQETQSG 313
RE K+TSAH +G+ + +HS D +I+ S +SG
Sbjct: 125 RESKKTSAHVLGSRS--LHSVDKSDIERSSAAGRSG 158
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 132 KKKAVGDNKENKPVDDSTTEISNEQEKEKERVLTPL 239
KKK +KE K +T+ + ++EK++E V PL
Sbjct: 311 KKKKKEKDKEKKAAAAATSSVEAKEEKQEESVTEPL 346
>At1g07460.1 68414.m00796 legume lectin family protein contains
Legume lectins beta-chain signature, PROSITE:PS00307
Length = 258
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -3
Query: 229 STRSFSFSCSFDISVVLSSTGLFSLLSPTAFF 134
S+ SFSFS SF S+ GL L+SP+ F
Sbjct: 18 SSNSFSFSTSFVFSIDAPGHGLTFLISPSMDF 49
>At4g00640.1 68417.m00088 hypothetical protein
Length = 425
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 150 DNKENKPVDDSTTEISNEQEKEKERVLT 233
DN+ KP D E E EK K VLT
Sbjct: 314 DNENGKPTADFAKEAEGEAEKSKNVVLT 341
>At1g11310.1 68414.m01299 seven transmembrane MLO family protein /
MLO-like protein 2 (MLO2) idenctical to membrane protein
Mlo2 [Arabidopsis thaliana] gi|14091574|gb|AAK53795;
similar to Mlo [Hordeum vulgare subsp. vulgare]
gi|1877221|emb|CAB06083 SWISS-PROT:P93766
Length = 573
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 480 NSPTPSVSGRTGKIYQGWNPETDTWDIKQSTASQEIHKLRKLELSYAEV 626
+SP+P SG +Q W+PE+ + + ST H+ + L+ E+
Sbjct: 509 SSPSPRYSGHGHHEHQFWDPESQHQEAETSTHHSLAHESSEPVLASVEL 557
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,527
Number of Sequences: 28952
Number of extensions: 336883
Number of successful extensions: 1233
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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