Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1003
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    27   3.4  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   4.5  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   6.0  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   6.0  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   7.9  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   7.9  

>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 492 SLVLASGENDVAIAHGIASTSVAFSPLIVKVQLTKSDKNESFAGG 626
           S VLA+   D+  A  +A +    S ++ ++ L+ SDK +S   G
Sbjct: 41  SEVLAANAEDMKAAKLLAESGKLSSSMVKRLDLSSSDKYDSMVQG 85


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 385 NTAAENNVTEPPIVENEKVEIDTINSTTSPFSDDPNQAV 269
           NTAAE+ + +      E V   T+ S+ +    +PN+ +
Sbjct: 445 NTAAESLINQEETTSGEAVTKSTVESSANEEEAEPNEII 483


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = -1

Query: 400  CSVLLNTAAENNVTEPPIVENEKVEIDTINSTTSPFSDDPNQAVALKLTTEGNYGGISQN 221
            C+ ++++ A  ++T P I E  + E+D     +   + DPN      L+ +  Y    Q 
Sbjct: 1031 CTGIIDSLAPISLTIPIIGETSRKELDQFLRNSKVNNFDPNAEAQRHLSYQARYRLKKQE 1090

Query: 220  NLN 212
             L+
Sbjct: 1091 RLD 1093


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 450 IHFVPSCPLLFEFISLVLASGENDVAIAHGIASTSVAFSPLIVKVQLTKSDK 605
           + + PS PL   F S    S + DV + HG   + +  +PLIV +++ ++ K
Sbjct: 659 VSYHPSLPL---FCS---GSDDGDVQVFHGRVYSDLLANPLIVPLKILRNHK 704


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 451 IVTVITKTAKEYMTTIPCSVLLN 383
           ++T +  TA  YM   P S LLN
Sbjct: 353 LITTVAVTASRYMNVFPLSNLLN 375


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 388 LNTAAENNVTEPPIVENEKVE 326
           ++T+ + N TEP +V+  KVE
Sbjct: 728 VDTSKQTNATEPEVVDKTKVE 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,075
Number of Sequences: 5004
Number of extensions: 52292
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)