Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1003
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0249 + 21697863-21697923,21698119-21698128,21698160-216987...    29   2.7  
12_02_0349 - 17820352-17821238,17822976-17823363                       28   6.2  
07_03_0431 - 18152041-18152085,18152368-18152685,18152927-181534...    28   6.2  
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421...    28   6.2  
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785...    28   6.2  
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525...    28   8.2  

>11_06_0249 +
           21697863-21697923,21698119-21698128,21698160-21698766,
           21699011-21699090,21699182-21699263,21699357-21699428,
           21700128-21700406
          Length = 396

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -1

Query: 637 QMILPPANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPD-ANTKDINSNNNGQ-- 467
           Q +L P  ++  SD  + T     ++A +        AT   PD +N K    N NG   
Sbjct: 152 QDLLSPMAETAGSDSTSVTSMEDVQEAKDAAPSETDDATGHPPDLSNDKACAGNGNGNVF 211

Query: 466 DGTKCIVTVITKTAK 422
              KC++T  TK  K
Sbjct: 212 QNAKCVLTTSTKKMK 226


>12_02_0349 - 17820352-17821238,17822976-17823363
          Length = 424

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -1

Query: 301 SPFSDDPNQAVALKLTTEGNYGG 233
           S FS  P+ A  LKL TEGN GG
Sbjct: 327 SVFSSSPDLANLLKLYTEGNGGG 349


>07_03_0431 -
           18152041-18152085,18152368-18152685,18152927-18153482,
           18153886-18154577,18155234-18155614,18156159-18156241,
           18156618-18156786,18157498-18157543,18158301-18158389,
           18158476-18158591,18159137-18159443
          Length = 933

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = -1

Query: 376 AENNVTEPPIVENEKVEIDTIN--STTSPF--SDDPNQAVALKLTTEGN-YGGISQNN 218
           AE N   PP  E E  ++ T+N    TSP   +D  +    L L  E N +GGIS ++
Sbjct: 185 AEENAMAPPNPEPEVADVPTVNLIHYTSPLTSADSTSGHTELSLPEEINSHGGISASS 242


>03_04_0091 +
           17241555-17241602,17241685-17241822,17241901-17242198,
           17242281-17242513,17242632-17242827,17242911-17243032,
           17243100-17243165,17243373-17243436,17243851-17244176
          Length = 496

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 385 NTAAENNVTEPPIVENEKVEIDTINSTTSPFSDDPNQAVALK 260
           N A +  ++EP  VEN   E +  NST    S + N   A++
Sbjct: 164 NPAGDGMISEPVAVENNVAEGEVTNSTVDGTSIENNATAAVE 205


>01_07_0084 +
           40976976-40977164,40978174-40978201,40978445-40978575,
           40978941-40979434,40979516-40979609,40979686-40979779,
           40980342-40980444,40980550-40980601,40980716-40980756,
           40980881-40980960,40981490-40981936,40982378-40982554,
           40983205-40983803,40983886-40985040
          Length = 1227

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 249 KETMEVSARITLTVHQNTVLFEIQSIRVLLLIRISQ 142
           KET E+SA   +TV Q    F  Q  RV   +R+S+
Sbjct: 101 KETREISASFGVTVTQVREFFASQRTRVRKFVRLSR 136


>11_06_0388 +
           23048576-23051546,23051830-23052371,23052444-23052517,
           23053006-23053090,23053281-23053367,23053585-23053657,
           23053882-23053925,23054041-23054169,23054301-23054402,
           23054529-23054585
          Length = 1387

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 23/91 (25%), Positives = 43/91 (47%)
 Frame = -1

Query: 520 SFSPDANTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEPPIVE 341
           S S D  T  I S        K I   I +T  E + + P    ++T +E  ++EP   +
Sbjct: 308 SSSNDPGTDKITSEPIDTQSEKIISEPI-ETQSEKIISEP----IDTQSEKIISEPIETQ 362

Query: 340 NEKVEIDTINSTTSPFSDDPNQAVALKLTTE 248
           +EK+  + I++ +     +P +A + K+ +E
Sbjct: 363 SEKIISEPIDAQSEKIISEPIEAQSEKIISE 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,131,063
Number of Sequences: 37544
Number of extensions: 298585
Number of successful extensions: 812
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)