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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1003
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_23463| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)                        31   0.90 
SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)                     30   2.1  
SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)               29   2.7  
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_13016| Best HMM Match : ResIII (HMM E-Value=0.62)                   28   6.3  

>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 38/184 (20%), Positives = 85/184 (46%), Gaps = 9/184 (4%)
 Frame = -1

Query: 634  MILPPANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTK-DINSNNNGQDGT 458
            +++P  ND  + +  + T+ ++ +  T V++   A  T    DA  K +  S + G+   
Sbjct: 1596 IVIPIVNDKDVENTESFTIVLTSDDPTVVVSPDTATITIKDDDALIKFEPVSVDVGEGDG 1655

Query: 457  KCIVTVITK--TAKEYMTTIPCSVLLNTA-AENNVTEPPIVENEKVEIDTINSTTSPFSD 287
            + ++TV  +   A+E++ T+  ++  NTA  +++ +EP + E   ++ + + +   P  +
Sbjct: 1656 EALLTVKREGNLAEEHIVTV--TITDNTAKKDSDYSEPAVKEITFLQNEVVKTINVPIIN 1713

Query: 286  D----PNQAVALKLTTEGNYGGISQNNLNCT-PEHGSIRDPINPCFAVNQNLTVIPISTT 122
            D     ++   +KLTT      IS +    T  +  +I   + P   V +    + ++ T
Sbjct: 1714 DHKVEDDETFRVKLTTNEPEVTISPDTAQVTINDDDAIISFVQPSKTVPEGAGTVNLTLT 1773

Query: 121  LATD 110
               D
Sbjct: 1774 RTGD 1777


>SB_23463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -1

Query: 619 ANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTKDINSNNNGQD---GTKCI 449
           A+ S  +++ N T+T +  KA++++ I   + +S   D   + +  NNN      GT   
Sbjct: 615 ASGSDYTEIANVTITFATNKASQLMNITIGVDSSVENDETFQALLYNNNPSQVLLGTSAT 674

Query: 448 VTVITKTAK 422
             +IT   K
Sbjct: 675 TVIITNDDK 683


>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
          Length = 165

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
 Frame = -3

Query: 557 YRSTCNSVCNCNIIFS*C*YQ-----RYKFEQQWTRRY-EMYRNCYN--KDSKGVYDDYP 402
           Y+  C   C+C + +  C Y+     RYK+     RRY   YR CY   +D+  VY  YP
Sbjct: 55  YKYHCYLKCSCKVKYYHCRYRRRCVWRYKYYHGKPRRYRHCYRYCYRRIRDASPVY--YP 112


>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2214

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 514 SPDANTKDINSNNNGQDGTKCIVTVITKTAKEYMTT 407
           S + N K+ ++NNN  +  K   TVIT TA    TT
Sbjct: 861 SNNGNNKNNSNNNNSSNSKKTTTTVITTTATTATTT 896


>SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 869

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 229 SQNNLNCTPEHGSIRDPINPCFAVNQNLTVIPISTTLATDVV 104
           S +N       G + D +N C AV+ + +++PIST  +  VV
Sbjct: 660 SSSNSTSLQSKGPVLDSVNSCTAVSADDSLVPISTESSFPVV 701


>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
          Length = 1105

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = -1

Query: 502 NTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEPP 350
           N  + N NNNG+  T    T  T T     TT   + +  T  +    + P
Sbjct: 39  NNNNNNGNNNGKTTTAATTTTTTTTTTTTATTTAAAAITTTTEDGTTGQGP 89



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/84 (23%), Positives = 29/84 (34%)
 Frame = -1

Query: 508 DANTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEPPIVENEKV 329
           + N  + N+NNNG +  K      T T     TT   +     AA    TE         
Sbjct: 33  NGNNNNNNNNNNGNNNGKTTTAATTTTTT--TTTTTTATTTAAAAITTTTEDGTTGQGPQ 90

Query: 328 EIDTINSTTSPFSDDPNQAVALKL 257
              T+ S  +P     N  V + +
Sbjct: 91  RFFTVTSINAPIGVRRNDDVMMNM 114


>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
          Length = 1486

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
 Frame = -1

Query: 478 NNGQDGTKCIVTVITKTAKEYMTTIPC--SVLLNTAAENNVTEPPIVENEKVEIDTINST 305
           NN  +   C+  +++K  + Y+   P   SV  +     ++ + P    +K+ I+    T
Sbjct: 506 NNKSNSASCVYHLLSKKLRMYLLRHPPKNSVRSSRRDRASLRDEPDASTKKLRIE---ET 562

Query: 304 TSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDP 179
             P SD+    V+   +T+       +  L+C  +   +R+P
Sbjct: 563 LGPPSDERLAKVSQAESTDSTDDDARRKRLSCNQDGPLLREP 604


>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 643 RLQMILPPANDSFLSDLVNCTLTISGEKATEVLAI 539
           +L  +LPP ND+ +S  VN  L   G +A  VLAI
Sbjct: 761 KLNKLLPPVNDANISLSVNAFLMFQGIRAA-VLAI 794


>SB_13016| Best HMM Match : ResIII (HMM E-Value=0.62)
          Length = 450

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 451 IVTVITKTAKEYMTTIPCSVLLNTAAENNV 362
           + T + +   EY+ T PC VLL   A+ N+
Sbjct: 176 VQTKVLRAILEYLATRPCQVLLKEWAQGNI 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,374,242
Number of Sequences: 59808
Number of extensions: 379019
Number of successful extensions: 1237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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