BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-1003 (700 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29 SB_23463| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90 SB_8898| Best HMM Match : WSC (HMM E-Value=6.4) 31 0.90 SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2 SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1 SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23) 30 2.1 SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39) 29 2.7 SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3 SB_13016| Best HMM Match : ResIII (HMM E-Value=0.62) 28 6.3 >SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 7645 Score = 32.7 bits (71), Expect = 0.29 Identities = 38/184 (20%), Positives = 85/184 (46%), Gaps = 9/184 (4%) Frame = -1 Query: 634 MILPPANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTK-DINSNNNGQDGT 458 +++P ND + + + T+ ++ + T V++ A T DA K + S + G+ Sbjct: 1596 IVIPIVNDKDVENTESFTIVLTSDDPTVVVSPDTATITIKDDDALIKFEPVSVDVGEGDG 1655 Query: 457 KCIVTVITK--TAKEYMTTIPCSVLLNTA-AENNVTEPPIVENEKVEIDTINSTTSPFSD 287 + ++TV + A+E++ T+ ++ NTA +++ +EP + E ++ + + + P + Sbjct: 1656 EALLTVKREGNLAEEHIVTV--TITDNTAKKDSDYSEPAVKEITFLQNEVVKTINVPIIN 1713 Query: 286 D----PNQAVALKLTTEGNYGGISQNNLNCT-PEHGSIRDPINPCFAVNQNLTVIPISTT 122 D ++ +KLTT IS + T + +I + P V + + ++ T Sbjct: 1714 DHKVEDDETFRVKLTTNEPEVTISPDTAQVTINDDDAIISFVQPSKTVPEGAGTVNLTLT 1773 Query: 121 LATD 110 D Sbjct: 1774 RTGD 1777 >SB_23463| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1430 Score = 31.1 bits (67), Expect = 0.90 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Frame = -1 Query: 619 ANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTKDINSNNNGQD---GTKCI 449 A+ S +++ N T+T + KA++++ I + +S D + + NNN GT Sbjct: 615 ASGSDYTEIANVTITFATNKASQLMNITIGVDSSVENDETFQALLYNNNPSQVLLGTSAT 674 Query: 448 VTVITKTAK 422 +IT K Sbjct: 675 TVIITNDDK 683 >SB_8898| Best HMM Match : WSC (HMM E-Value=6.4) Length = 165 Score = 31.1 bits (67), Expect = 0.90 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Frame = -3 Query: 557 YRSTCNSVCNCNIIFS*C*YQ-----RYKFEQQWTRRY-EMYRNCYN--KDSKGVYDDYP 402 Y+ C C+C + + C Y+ RYK+ RRY YR CY +D+ VY YP Sbjct: 55 YKYHCYLKCSCKVKYYHCRYRRRCVWRYKYYHGKPRRYRHCYRYCYRRIRDASPVY--YP 112 >SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2214 Score = 30.7 bits (66), Expect = 1.2 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -1 Query: 514 SPDANTKDINSNNNGQDGTKCIVTVITKTAKEYMTT 407 S + N K+ ++NNN + K TVIT TA TT Sbjct: 861 SNNGNNKNNSNNNNSSNSKKTTTTVITTTATTATTT 896 >SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 869 Score = 29.9 bits (64), Expect = 2.1 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -1 Query: 229 SQNNLNCTPEHGSIRDPINPCFAVNQNLTVIPISTTLATDVV 104 S +N G + D +N C AV+ + +++PIST + VV Sbjct: 660 SSSNSTSLQSKGPVLDSVNSCTAVSADDSLVPISTESSFPVV 701 >SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23) Length = 1105 Score = 29.9 bits (64), Expect = 2.1 Identities = 14/51 (27%), Positives = 20/51 (39%) Frame = -1 Query: 502 NTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEPP 350 N + N NNNG+ T T T T TT + + T + + P Sbjct: 39 NNNNNNGNNNGKTTTAATTTTTTTTTTTTATTTAAAAITTTTEDGTTGQGP 89 Score = 27.9 bits (59), Expect = 8.4 Identities = 20/84 (23%), Positives = 29/84 (34%) Frame = -1 Query: 508 DANTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEPPIVENEKV 329 + N + N+NNNG + K T T TT + AA TE Sbjct: 33 NGNNNNNNNNNNGNNNGKTTTAATTTTTT--TTTTTTATTTAAAAITTTTEDGTTGQGPQ 90 Query: 328 EIDTINSTTSPFSDDPNQAVALKL 257 T+ S +P N V + + Sbjct: 91 RFFTVTSINAPIGVRRNDDVMMNM 114 >SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39) Length = 1486 Score = 29.5 bits (63), Expect = 2.7 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Frame = -1 Query: 478 NNGQDGTKCIVTVITKTAKEYMTTIPC--SVLLNTAAENNVTEPPIVENEKVEIDTINST 305 NN + C+ +++K + Y+ P SV + ++ + P +K+ I+ T Sbjct: 506 NNKSNSASCVYHLLSKKLRMYLLRHPPKNSVRSSRRDRASLRDEPDASTKKLRIE---ET 562 Query: 304 TSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDP 179 P SD+ V+ +T+ + L+C + +R+P Sbjct: 563 LGPPSDERLAKVSQAESTDSTDDDARRKRLSCNQDGPLLREP 604 >SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 796 Score = 28.3 bits (60), Expect = 6.3 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -1 Query: 643 RLQMILPPANDSFLSDLVNCTLTISGEKATEVLAI 539 +L +LPP ND+ +S VN L G +A VLAI Sbjct: 761 KLNKLLPPVNDANISLSVNAFLMFQGIRAA-VLAI 794 >SB_13016| Best HMM Match : ResIII (HMM E-Value=0.62) Length = 450 Score = 28.3 bits (60), Expect = 6.3 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -1 Query: 451 IVTVITKTAKEYMTTIPCSVLLNTAAENNV 362 + T + + EY+ T PC VLL A+ N+ Sbjct: 176 VQTKVLRAILEYLATRPCQVLLKEWAQGNI 205 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,374,242 Number of Sequences: 59808 Number of extensions: 379019 Number of successful extensions: 1237 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1234 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1829596184 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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