Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1003
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_23463| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4) 31 0.90
SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23) 30 2.1
SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39) 29 2.7
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_13016| Best HMM Match : ResIII (HMM E-Value=0.62) 28 6.3
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 32.7 bits (71), Expect = 0.29
Identities = 38/184 (20%), Positives = 85/184 (46%), Gaps = 9/184 (4%)
Frame = -1
Query: 634 MILPPANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTK-DINSNNNGQDGT 458
+++P ND + + + T+ ++ + T V++ A T DA K + S + G+
Sbjct: 1596 IVIPIVNDKDVENTESFTIVLTSDDPTVVVSPDTATITIKDDDALIKFEPVSVDVGEGDG 1655
Query: 457 KCIVTVITK--TAKEYMTTIPCSVLLNTA-AENNVTEPPIVENEKVEIDTINSTTSPFSD 287
+ ++TV + A+E++ T+ ++ NTA +++ +EP + E ++ + + + P +
Sbjct: 1656 EALLTVKREGNLAEEHIVTV--TITDNTAKKDSDYSEPAVKEITFLQNEVVKTINVPIIN 1713
Query: 286 D----PNQAVALKLTTEGNYGGISQNNLNCT-PEHGSIRDPINPCFAVNQNLTVIPISTT 122
D ++ +KLTT IS + T + +I + P V + + ++ T
Sbjct: 1714 DHKVEDDETFRVKLTTNEPEVTISPDTAQVTINDDDAIISFVQPSKTVPEGAGTVNLTLT 1773
Query: 121 LATD 110
D
Sbjct: 1774 RTGD 1777
>SB_23463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 31.1 bits (67), Expect = 0.90
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -1
Query: 619 ANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTKDINSNNNGQD---GTKCI 449
A+ S +++ N T+T + KA++++ I + +S D + + NNN GT
Sbjct: 615 ASGSDYTEIANVTITFATNKASQLMNITIGVDSSVENDETFQALLYNNNPSQVLLGTSAT 674
Query: 448 VTVITKTAK 422
+IT K
Sbjct: 675 TVIITNDDK 683
>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
Length = 165
Score = 31.1 bits (67), Expect = 0.90
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Frame = -3
Query: 557 YRSTCNSVCNCNIIFS*C*YQ-----RYKFEQQWTRRY-EMYRNCYN--KDSKGVYDDYP 402
Y+ C C+C + + C Y+ RYK+ RRY YR CY +D+ VY YP
Sbjct: 55 YKYHCYLKCSCKVKYYHCRYRRRCVWRYKYYHGKPRRYRHCYRYCYRRIRDASPVY--YP 112
>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2214
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 514 SPDANTKDINSNNNGQDGTKCIVTVITKTAKEYMTT 407
S + N K+ ++NNN + K TVIT TA TT
Sbjct: 861 SNNGNNKNNSNNNNSSNSKKTTTTVITTTATTATTT 896
>SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 229 SQNNLNCTPEHGSIRDPINPCFAVNQNLTVIPISTTLATDVV 104
S +N G + D +N C AV+ + +++PIST + VV
Sbjct: 660 SSSNSTSLQSKGPVLDSVNSCTAVSADDSLVPISTESSFPVV 701
>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
Length = 1105
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/51 (27%), Positives = 20/51 (39%)
Frame = -1
Query: 502 NTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEPP 350
N + N NNNG+ T T T T TT + + T + + P
Sbjct: 39 NNNNNNGNNNGKTTTAATTTTTTTTTTTTATTTAAAAITTTTEDGTTGQGP 89
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/84 (23%), Positives = 29/84 (34%)
Frame = -1
Query: 508 DANTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEPPIVENEKV 329
+ N + N+NNNG + K T T TT + AA TE
Sbjct: 33 NGNNNNNNNNNNGNNNGKTTTAATTTTTT--TTTTTTATTTAAAAITTTTEDGTTGQGPQ 90
Query: 328 EIDTINSTTSPFSDDPNQAVALKL 257
T+ S +P N V + +
Sbjct: 91 RFFTVTSINAPIGVRRNDDVMMNM 114
>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
Length = 1486
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Frame = -1
Query: 478 NNGQDGTKCIVTVITKTAKEYMTTIPC--SVLLNTAAENNVTEPPIVENEKVEIDTINST 305
NN + C+ +++K + Y+ P SV + ++ + P +K+ I+ T
Sbjct: 506 NNKSNSASCVYHLLSKKLRMYLLRHPPKNSVRSSRRDRASLRDEPDASTKKLRIE---ET 562
Query: 304 TSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDP 179
P SD+ V+ +T+ + L+C + +R+P
Sbjct: 563 LGPPSDERLAKVSQAESTDSTDDDARRKRLSCNQDGPLLREP 604
>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 643 RLQMILPPANDSFLSDLVNCTLTISGEKATEVLAI 539
+L +LPP ND+ +S VN L G +A VLAI
Sbjct: 761 KLNKLLPPVNDANISLSVNAFLMFQGIRAA-VLAI 794
>SB_13016| Best HMM Match : ResIII (HMM E-Value=0.62)
Length = 450
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 451 IVTVITKTAKEYMTTIPCSVLLNTAAENNV 362
+ T + + EY+ T PC VLL A+ N+
Sbjct: 176 VQTKVLRAILEYLATRPCQVLLKEWAQGNI 205
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,374,242
Number of Sequences: 59808
Number of extensions: 379019
Number of successful extensions: 1237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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