Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1003
(700 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC063855-1|AAH63855.1| 1105|Homo sapiens ATF7IP protein protein. 31 3.0
AY337596-1|AAQ92978.1| 1270|Homo sapiens SETDB1-associated prote... 31 3.0
AK001550-1|BAA91751.1| 709|Homo sapiens protein ( Homo sapiens ... 31 3.0
AJ242978-1|CAB45135.1| 514|Homo sapiens p621 protein. 31 3.0
AF425650-1|AAO91864.1| 1270|Homo sapiens MBD1-containing chromat... 31 3.0
AL160037-1|CAH72024.1| 1371|Homo sapiens leucine rich repeat con... 30 6.9
AL024509-3|CAI21665.1| 1371|Homo sapiens leucine rich repeat con... 30 6.9
AL022170-1|CAI21583.1| 1371|Homo sapiens leucine rich repeat con... 30 6.9
>BC063855-1|AAH63855.1| 1105|Homo sapiens ATF7IP protein protein.
Length = 1105
Score = 31.5 bits (68), Expect = 3.0
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -1
Query: 514 SPDANTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPCS--VLLNTAAENNVTEPPIVE 341
SP D+NSNNN V + ++ + + P S +NT + N+ PP V
Sbjct: 672 SPGKTVNDVNSNNNMSYRNAGTVRQMLESKRNVSESAPPSFQTPVNTVSSTNLVTPPAVV 731
Query: 340 NEKVEIDT 317
+ + ++ T
Sbjct: 732 SSQPKLQT 739
>AY337596-1|AAQ92978.1| 1270|Homo sapiens SETDB1-associated protein
protein.
Length = 1270
Score = 31.5 bits (68), Expect = 3.0
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -1
Query: 514 SPDANTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPCS--VLLNTAAENNVTEPPIVE 341
SP D+NSNNN V + ++ + + P S +NT + N+ PP V
Sbjct: 673 SPGKTVNDVNSNNNMSYRNAGTVRQMLESKRNVSESAPPSFQTPVNTVSSTNLVTPPAVV 732
Query: 340 NEKVEIDT 317
+ + ++ T
Sbjct: 733 SSQPKLQT 740
>AK001550-1|BAA91751.1| 709|Homo sapiens protein ( Homo sapiens
cDNA FLJ10688 fis, clone NT2RP3000320, highly similar to
partial mRNA for putative p621 protein which interacts
with ).
Length = 709
Score = 31.5 bits (68), Expect = 3.0
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -1
Query: 514 SPDANTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPCS--VLLNTAAENNVTEPPIVE 341
SP D+NSNNN V + ++ + + P S +NT + N+ PP V
Sbjct: 112 SPGKTVNDVNSNNNMSYRNAGTVRQMLESKRNVSESAPPSFQTPVNTVSSTNLVTPPAVV 171
Query: 340 NEKVEIDT 317
+ + ++ T
Sbjct: 172 SSQPKLQT 179
>AJ242978-1|CAB45135.1| 514|Homo sapiens p621 protein.
Length = 514
Score = 31.5 bits (68), Expect = 3.0
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -1
Query: 514 SPDANTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPCS--VLLNTAAENNVTEPPIVE 341
SP D+NSNNN V + ++ + + P S +NT + N+ PP V
Sbjct: 129 SPGKTVNDVNSNNNMSYRNAGTVRQMLESKRNVSESAPPSFQTPVNTVSSTNLVTPPAVV 188
Query: 340 NEKVEIDT 317
+ + ++ T
Sbjct: 189 SSQPKLQT 196
>AF425650-1|AAO91864.1| 1270|Homo sapiens MBD1-containing chromatin
associated factor protein.
Length = 1270
Score = 31.5 bits (68), Expect = 3.0
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -1
Query: 514 SPDANTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPCS--VLLNTAAENNVTEPPIVE 341
SP D+NSNNN V + ++ + + P S +NT + N+ PP V
Sbjct: 673 SPGKTVNDVNSNNNMSYRNAGTVRQMLESKRNVSESAPPSFQTPVNTVSSTNLVTPPAVV 732
Query: 340 NEKVEIDT 317
+ + ++ T
Sbjct: 733 SSQPKLQT 740
>AL160037-1|CAH72024.1| 1371|Homo sapiens leucine rich repeat
containing 16 protein.
Length = 1371
Score = 30.3 bits (65), Expect = 6.9
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -1
Query: 316 INSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFAVNQNLTVI 137
IN + + S +P +A+ L L N G+S + NC G + + C A N+T +
Sbjct: 429 INLSGTKLSPEPLKALLLGLACNHNLKGVSLDLSNCELRSGGAQ-VLEGCIAEIHNITSL 487
Query: 136 PIS 128
IS
Sbjct: 488 DIS 490
>AL024509-3|CAI21665.1| 1371|Homo sapiens leucine rich repeat
containing 16 protein.
Length = 1371
Score = 30.3 bits (65), Expect = 6.9
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -1
Query: 316 INSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFAVNQNLTVI 137
IN + + S +P +A+ L L N G+S + NC G + + C A N+T +
Sbjct: 429 INLSGTKLSPEPLKALLLGLACNHNLKGVSLDLSNCELRSGGAQ-VLEGCIAEIHNITSL 487
Query: 136 PIS 128
IS
Sbjct: 488 DIS 490
>AL022170-1|CAI21583.1| 1371|Homo sapiens leucine rich repeat
containing 16 protein.
Length = 1371
Score = 30.3 bits (65), Expect = 6.9
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -1
Query: 316 INSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFAVNQNLTVI 137
IN + + S +P +A+ L L N G+S + NC G + + C A N+T +
Sbjct: 429 INLSGTKLSPEPLKALLLGLACNHNLKGVSLDLSNCELRSGGAQ-VLEGCIAEIHNITSL 487
Query: 136 PIS 128
IS
Sbjct: 488 DIS 490
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,614,832
Number of Sequences: 237096
Number of extensions: 1700127
Number of successful extensions: 3270
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3265
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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