Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1003
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 34 0.085
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 31 0.60
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 31 1.0
Z83223-6|CAB05719.1| 884|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z81538-6|CAB04387.1| 884|Caenorhabditis elegans Hypothetical pr... 30 1.8
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 30 1.8
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 30 1.8
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 30 1.8
AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical ... 30 1.8
Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical pr... 29 2.4
U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying defe... 29 2.4
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 29 2.4
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 29 2.4
AC026301-1|AAK68897.1| 280|Caenorhabditis elegans Hypothetical ... 29 2.4
AC024821-4|AAF60787.1| 300|Caenorhabditis elegans Hypothetical ... 29 3.2
U00033-3|AAC48304.2| 351|Caenorhabditis elegans Serpentine rece... 29 4.2
U00033-2|AAP68944.1| 351|Caenorhabditis elegans Serpentine rece... 29 4.2
U64857-7|AAC25861.2| 373|Caenorhabditis elegans Groundhog (hedg... 28 7.4
Z81125-2|CAD56600.1| 507|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81125-1|CAB03382.1| 501|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 27 9.8
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr... 27 9.8
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 34.3 bits (75), Expect = 0.085
Identities = 22/82 (26%), Positives = 32/82 (39%)
Frame = -1
Query: 487 NSNNNGQDGTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEPPIVENEKVEIDTINS 308
+S ++ D T V+ T +E TT + T E TEP E E T
Sbjct: 168 HSGHSDGDSTSTAEIVLVTTTEEITTTTSETTTSATTTEETTTEPSTTEPSTTEEFTTEE 227
Query: 307 TTSPFSDDPNQAVALKLTTEGN 242
TT+ ++ P T+GN
Sbjct: 228 TTTVSTNPPTTPELSDDPTDGN 249
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 31.5 bits (68), Expect = 0.60
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Frame = -1
Query: 538 PCAIATSFSPDA-NTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNV 362
P T+ +P+ +T+ +S+ T T+T +T P TA E
Sbjct: 325 PVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTRTEPPSSSTTPVQNTTTTAPETTS 384
Query: 361 TEPPIVENEKVEIDTINSTTSPFSDDPNQAVALKLTT 251
TEPP V+ T + + ++ P+ + TT
Sbjct: 385 TEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTT 421
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 409 TIPCSVLLNTAAENNVTEPPIVENEKVEIDTINSTTSPFSDDPN 278
T P ++ + AEN V E P V + ++ +T T S DD N
Sbjct: 666 TDPTTLTCSMEAENEVCETPAVVSVEIRDETNGETNSDLKDDEN 709
>Z83223-6|CAB05719.1| 884|Caenorhabditis elegans Hypothetical
protein E01G4.6 protein.
Length = 884
Score = 29.9 bits (64), Expect = 1.8
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 1/155 (0%)
Frame = -1
Query: 601 SDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTKDINSNNNGQDGTKCIVTVITKTAK 422
S+ +C +S +ATE CA T+ S KD+N + + V + K
Sbjct: 22 SNRTSCFHYVSCLEATEANLKQCAGGTAISLTLEAKDVNIRDLVKYRALEFVGCQDRLLK 81
Query: 421 EYMTTIPCSVLLNTAAENNVTEPPIVENEKVEIDTINSTTSPFSDDPNQAVALKLTTEGN 242
E + +L+N A + P E P S + ++ AL+ E
Sbjct: 82 EVVDFESLQILVNEDARECFEKLPESSKRVEEFTDSCDYVQPVSRNASKGDALQCLIEFK 141
Query: 241 YG-GISQNNLNCTPEHGSIRDPINPCFAVNQNLTV 140
++ L C P+H + +N QN V
Sbjct: 142 QDREYCESLLECCPDHTRCGERMNAVSLSYQNARV 176
>Z81538-6|CAB04387.1| 884|Caenorhabditis elegans Hypothetical
protein E01G4.6 protein.
Length = 884
Score = 29.9 bits (64), Expect = 1.8
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 1/155 (0%)
Frame = -1
Query: 601 SDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTKDINSNNNGQDGTKCIVTVITKTAK 422
S+ +C +S +ATE CA T+ S KD+N + + V + K
Sbjct: 22 SNRTSCFHYVSCLEATEANLKQCAGGTAISLTLEAKDVNIRDLVKYRALEFVGCQDRLLK 81
Query: 421 EYMTTIPCSVLLNTAAENNVTEPPIVENEKVEIDTINSTTSPFSDDPNQAVALKLTTEGN 242
E + +L+N A + P E P S + ++ AL+ E
Sbjct: 82 EVVDFESLQILVNEDARECFEKLPESSKRVEEFTDSCDYVQPVSRNASKGDALQCLIEFK 141
Query: 241 YG-GISQNNLNCTPEHGSIRDPINPCFAVNQNLTV 140
++ L C P+H + +N QN V
Sbjct: 142 QDREYCESLLECCPDHTRCGERMNAVSLSYQNARV 176
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -1
Query: 367 NVTEPPIVENEKVEIDTINSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSI 188
NVT P +VE ++ N + + + + +++ T N G ISQN + T + +
Sbjct: 528 NVTIPAVVEVHTNSTNSTNHQNNGLTQNAPASTSMQAGTSSNDGVISQNGTSSTSQSNRL 587
Query: 187 RDP 179
P
Sbjct: 588 NLP 590
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -1
Query: 367 NVTEPPIVENEKVEIDTINSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSI 188
NVT P +VE ++ N + + + + +++ T N G ISQN + T + +
Sbjct: 296 NVTIPAVVEVHTNSTNSTNHQNNGLTQNAPASTSMQAGTSSNDGVISQNGTSSTSQSNRL 355
Query: 187 RDP 179
P
Sbjct: 356 NLP 358
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -1
Query: 367 NVTEPPIVENEKVEIDTINSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSI 188
NVT P +VE ++ N + + + + +++ T N G ISQN + T + +
Sbjct: 528 NVTIPAVVEVHTNSTNSTNHQNNGLTQNAPASTSMQAGTSSNDGVISQNGTSSTSQSNRL 587
Query: 187 RDP 179
P
Sbjct: 588 NLP 590
>AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical
protein Y68A4A.5 protein.
Length = 572
Score = 29.9 bits (64), Expect = 1.8
Identities = 28/102 (27%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Frame = -1
Query: 448 VTVITKTAKEYMTTIPCSVLLNTAAENNV------TEPPIVENEKVEIDTINSTTSPFSD 287
V T T T C+ T V T+ P V K + +PF D
Sbjct: 33 VDPFTMTIASGFQTTQCTTCSETKTSQRVNPLKTTTKTPAVTTTKSIVPLQCQKFTPFKD 92
Query: 286 DPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFA 161
N A TT N G S+ ++ CT G D I C A
Sbjct: 93 PMNAAAKCTATTGMNSAGCSKLSVKCTINPGFECD-ITKCMA 133
>Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical protein
K12D12.2 protein.
Length = 1696
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = -1
Query: 604 LSDLVNCTLTISGEKATEVLAIPCAIATSFSPD-ANTKDINSNNNGQDGTKCIVTVITK- 431
LSD ++C +T +G + T+ I C +F P A+TK++ ++ G ++ +I +
Sbjct: 966 LSDAIDCQVTRTGNRLTDTNNI-CYYLLAFRPSKAHTKELYQADDVLTGLHYVLYIIEQF 1024
Query: 430 TAKEYMTTIPCSVLLNTA 377
+ +P S LL A
Sbjct: 1025 VMSKKPFDLPFSALLEPA 1042
>U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying
defective protein 27,isoform c protein.
Length = 612
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 409 TIPCSVLLNTAAENNVTEPPIVENEKVEIDTINSTTSPFSDDPN 278
T P + + AEN V E P V + ++ +T T S DD N
Sbjct: 151 TDPTTPTCSMEAENEVCETPAVVSVEIRDETNGETNSDLKDDEN 194
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying
defective protein 27,isoform b protein.
Length = 1124
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 409 TIPCSVLLNTAAENNVTEPPIVENEKVEIDTINSTTSPFSDDPN 278
T P + + AEN V E P V + ++ +T T S DD N
Sbjct: 663 TDPTTPTCSMEAENEVCETPAVVSVEIRDETNGETNSDLKDDEN 706
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying
defective protein 27,isoform a protein.
Length = 1129
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 409 TIPCSVLLNTAAENNVTEPPIVENEKVEIDTINSTTSPFSDDPN 278
T P + + AEN V E P V + ++ +T T S DD N
Sbjct: 666 TDPTTPTCSMEAENEVCETPAVVSVEIRDETNGETNSDLKDDEN 709
>AC026301-1|AAK68897.1| 280|Caenorhabditis elegans Hypothetical
protein Y54F10BM.6 protein.
Length = 280
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 292 SDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFAVN 155
SD + + LT EG GGI++N P + +IRD + F++N
Sbjct: 179 SDFTQKKRVVCLTCEGRSGGITENWKPHVPINYAIRDLLKDSFSIN 224
>AC024821-4|AAF60787.1| 300|Caenorhabditis elegans Hypothetical
protein Y55B1AR.3 protein.
Length = 300
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 352 PIVENEKVEIDTINSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIR 185
P + +K E NST+ P DD + +++ G+ I ++LN P+ S +
Sbjct: 44 PKIGIKKTEGSAPNSTSDPTGDDKTRIKEIRIHQRGDQWIIDMDSLNVKPDSCSTK 99
>U00033-3|AAC48304.2| 351|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 9 protein.
Length = 351
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 6 FLNEILFIANNNKIKLLEQTQSTKYSICNKFYLTTSVAKVV 128
FL I I +N K+K + T STK+ + ++ T V VV
Sbjct: 212 FLFNIKLIRDNAKLKSINSTLSTKFQLEEVYFSTMFVITVV 252
>U00033-2|AAP68944.1| 351|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 8 protein.
Length = 351
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 6 FLNEILFIANNNKIKLLEQTQSTKYSICNKFYLTTSVAKVV 128
FL I I +N K+K + T STK+ + ++ T V VV
Sbjct: 212 FLFNIKLIRDNAKLKSINSTLSTKFQLEEVYFSTMFVITVV 252
>U64857-7|AAC25861.2| 373|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 8 protein.
Length = 373
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -1
Query: 364 VTEPPIVENEKVEIDTINSTTSPFSDDPNQAVALKLTTEGNYGGISQN 221
V EPP + E I ++ T+P S V LK +GN GGI+QN
Sbjct: 120 VVEPPAMPYEMTTIASVGPLTTPAS------VGLK---KGNIGGIAQN 158
>Z81125-2|CAD56600.1| 507|Caenorhabditis elegans Hypothetical
protein T22A3.4b protein.
Length = 507
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -1
Query: 589 NCTLTISGEKATEVL-AIPCAIATSFSPDANTKDINSNNNGQDGTKCIVTVIT-KTAKEY 416
NC T + + L AI CA +P ++ N + K IV T K A+EY
Sbjct: 266 NCECTRCMDPEDDALTAIRCANPACDAPILTSETEEPMNIACEKCKTIVEEDTVKAAQEY 325
Query: 415 MTTIPCS 395
M T+P S
Sbjct: 326 MKTLPAS 332
>Z81125-1|CAB03382.1| 501|Caenorhabditis elegans Hypothetical
protein T22A3.4a protein.
Length = 501
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -1
Query: 589 NCTLTISGEKATEVL-AIPCAIATSFSPDANTKDINSNNNGQDGTKCIVTVIT-KTAKEY 416
NC T + + L AI CA +P ++ N + K IV T K A+EY
Sbjct: 266 NCECTRCMDPEDDALTAIRCANPACDAPILTSETEEPMNIACEKCKTIVEEDTVKAAQEY 325
Query: 415 MTTIPCS 395
M T+P S
Sbjct: 326 MKTLPAS 332
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
ZK945.9 protein.
Length = 3178
Score = 27.5 bits (58), Expect = 9.8
Identities = 29/122 (23%), Positives = 49/122 (40%)
Frame = -1
Query: 577 TISGEKATEVLAIPCAIATSFSPDANTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPC 398
T+S A E I A + A D +++NN + + ++ I+ + +
Sbjct: 1262 TVSPISAAEQAIIDAQKADVMNQLAGIMDGSASNNSLNTSSSLLNQISSLPAADLVEVAQ 1321
Query: 397 SVLLNTAAENNVTEPPIVENEKVEIDTINSTTSPFSDDPNQAVALKLTTEGNYGGISQNN 218
S+L NT V V+ K D I +T S +D+ +A +T N S +
Sbjct: 1322 SLLSNTLKIPGVGNMSSVDVLKTLQDNIATTNSELADE----MAKVITKLANVNMTSAQS 1377
Query: 217 LN 212
LN
Sbjct: 1378 LN 1379
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.5 bits (58), Expect = 9.8
Identities = 29/122 (23%), Positives = 49/122 (40%)
Frame = -1
Query: 577 TISGEKATEVLAIPCAIATSFSPDANTKDINSNNNGQDGTKCIVTVITKTAKEYMTTIPC 398
T+S A E I A + A D +++NN + + ++ I+ + +
Sbjct: 1262 TVSPISAAEQAIIDAQKADVMNQLAGIMDGSASNNSLNTSSSLLNQISSLPAADLVEVAQ 1321
Query: 397 SVLLNTAAENNVTEPPIVENEKVEIDTINSTTSPFSDDPNQAVALKLTTEGNYGGISQNN 218
S+L NT V V+ K D I +T S +D+ +A +T N S +
Sbjct: 1322 SLLSNTLKIPGVGNMSSVDVLKTLQDNIATTNSELADE----MAKVITKLANVNMTSAQS 1377
Query: 217 LN 212
LN
Sbjct: 1378 LN 1379
>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical protein
W03A3.2 protein.
Length = 1540
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 496 KDINSNNNGQDGTKCIVTVITKTAKEYMTTIPCS-VLLNTAAENNVTEPPIVENEKVEID 320
+ INSN + + VT TK+AKE I + + +T P++++ K+EI+
Sbjct: 907 ESINSNASDNNSFDVFVTPPTKSAKEEKRRIAVKHPRVGNIIYSPLTSSPVIKHPKLEIN 966
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,645,787
Number of Sequences: 27780
Number of extensions: 295341
Number of successful extensions: 955
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -