Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1003
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 640 LQMILPPANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSF 515
           + +I+P    SFLS LV    + SGEK +  ++I  ++   F
Sbjct: 241 VNLIIPCVGISFLSVLVFYLPSDSGEKVSLSISILLSLTVFF 282


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 500 YQRYKFEQQWTRRYEMYRNCYNKD 429
           Y+ YK    +   Y+M++  YNKD
Sbjct: 419 YRIYKRIIDYYHSYKMHQKPYNKD 442


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 500 YQRYKFEQQWTRRYEMYRNCYNKD 429
           Y+ YK    +   Y+M++  YNKD
Sbjct: 419 YRIYKRIIDYYHSYKMHQKPYNKD 442


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 640 LQMILPPANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSF 515
           + +I+P    SFL+ LV    + SGEK +  ++I  ++   F
Sbjct: 245 VNLIIPCMGISFLTVLVFYLPSDSGEKVSLSISILLSLTVFF 286


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 586 CTLTISGEKATEVLAIPCAIATSFSPDANTKDINSNNNGQD 464
           CT   +G    E        +T  + +ANT   N+NNN  +
Sbjct: 206 CTEATAGAVVLETCQRNSNNSTITAGNANTNASNNNNNNNN 246


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 358 EPPIVENEKVEIDTINSTTSPFSDDP 281
           EPPI+   +   DT N    P   DP
Sbjct: 640 EPPIMPRVQNATDTTNFDEYPPDSDP 665


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,182
Number of Sequences: 438
Number of extensions: 4483
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)