Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1003
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61920.1 68414.m06985 hypothetical protein 29 2.2
At1g16900.1 68414.m02047 curculin-like (mannose-binding) lectin ... 29 3.0
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 28 5.2
At1g76380.2 68414.m08875 DNA-binding bromodomain-containing prot... 28 5.2
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 28 5.2
At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein ... 28 6.8
At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein ... 28 6.8
At5g19670.1 68418.m02340 exostosin family protein contains Pfam ... 27 9.0
At3g52170.1 68416.m05727 expressed protein 27 9.0
>At1g61920.1 68414.m06985 hypothetical protein
Length = 96
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -1
Query: 493 DINSNNNGQDGTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEPPIV 344
D N NN+G DG +V V+ T +++ TAA VT +V
Sbjct: 23 DDNGNNSGSDGG--VVVVVVMVVPMITATAAVAIMTTTAAVTMVTSTTVV 70
>At1g16900.1 68414.m02047 curculin-like (mannose-binding) lectin
family protein very low similarity to Ser Thr protein
kinase GI:2598067 from (Zea mays); contains Pfam lectin
(probable mannose binding) domain PF01453
Length = 919
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 173 SVFCC*SESHSYSNFYYLGHRCSQVKFVTNG 81
SV C SE H Y + +++ H S+V+++ +G
Sbjct: 782 SVLCVGSEWHRYPSSFFVPHYISEVRWIDDG 812
>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -1
Query: 412 TTIPCSVLLNTAAENNVTEPPIVENEKVEIDTINSTTSPFSDDPNQAVALKLTTEGN 242
T++ S++ N + + E V N++ EI+ + +S F+ PNQ + + +GN
Sbjct: 483 TSVSSSIIGNIHSSHESKESVQVLNQETEINGLVRGSSGFNHKPNQMLETAGSQQGN 539
>At1g76380.2 68414.m08875 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 580
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -1
Query: 412 TTIPCSVLLNTAAENNVTEPPIVENEKVEIDTINSTTSPFSDDPNQAVALKLTTEGN 242
T++ S++ N + + E V N++ EI+ + +S F+ PNQ + + +GN
Sbjct: 484 TSVSSSIIGNIHSSHESKESVQVLNQETEINGLVRGSSGFNHKPNQMLETAGSQQGN 540
>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -1
Query: 412 TTIPCSVLLNTAAENNVTEPPIVENEKVEIDTINSTTSPFSDDPNQAVALKLTTEGN 242
T++ S++ N + + E V N++ EI+ + +S F+ PNQ + + +GN
Sbjct: 483 TSVSSSIIGNIHSSHESKESVQVLNQETEINGLVRGSSGFNHKPNQMLETAGSQQGN 539
>At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -1
Query: 316 INSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPI 176
+++ PF+ P AV + N SQNN NC + P+
Sbjct: 150 MSTAPGPFTGQPGSAVFPYVREANNVASQSQNNNNCGAREFDLPKPV 196
>At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -1
Query: 316 INSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPI 176
+++ PF+ P AV + N SQNN NC + P+
Sbjct: 150 MSTAPGPFTGQPGSAVFPYVREANNVASQSQNNNNCGAREFDLPKPV 196
>At5g19670.1 68418.m02340 exostosin family protein contains Pfam
domain, PF03016: Exostosin family
Length = 600
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 39 NKIKLLEQTQSTKYSICNKFYLTTSVAKVVE 131
+K+ +EQ +S+KY IC K Y S +VVE
Sbjct: 475 SKMNYIEQMKSSKYCICPKGYEVNS-PRVVE 504
>At3g52170.1 68416.m05727 expressed protein
Length = 499
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 583 TLTISGEKATEVLAIPCAIATSFSPDANTKDINSNNNGQDGTK 455
T+ +S E E + +T SPDA ++N G GT+
Sbjct: 262 TIDMSAETVVETFPLKSVTSTMDSPDAQPTELNKVCEGGKGTE 304
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,471,304
Number of Sequences: 28952
Number of extensions: 259958
Number of successful extensions: 775
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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