Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1002
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    31   0.23 
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro...    29   0.71 
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    29   0.71 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    28   1.6  
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.9  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   3.8  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    25   8.7  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
 Frame = +3

Query: 351 YPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINISNNRNQEAIAAEIGFFHPRLDKEV 530
           Y    ++ Y+   EA + +DK K   K +        +N+N      ++GFF P      
Sbjct: 150 YAKKQENAYL---EAVMQMDKSKSRFKGAETEYNRALDNKNTGDSQKKVGFFKP------ 200

Query: 531 VIKSNA-VFKVPEPNRYILESSVSLCHSSL-GADRVSKLLLDVSPTKFV 671
             KSNA + K+ +  R   E++ S  HS +  A  V K LL +    ++
Sbjct: 201 --KSNAQLTKLEDEARLKAENAESDMHSKIENAQNVQKQLLCIHRPNYI 247


>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
           protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 426 HKTSVRYLINISNNRNQEAIAAEIGFFHPRLDKEVVIKSNAVF 554
           H    R + NI N + +++I  +  ++H +   E +IK+ A F
Sbjct: 120 HVPDERLVSNIKNTQTKDSITRDSAYYHRKTMTESIIKTLAAF 162


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = -3

Query: 532 TTSLSSLGWKNPISAAIAS*FLLLEMLMRYLTEVLCPCFFLSRSRQASPLNIYGESL 362
           T S S  G++  IS  + S   LL  L    T   C C F S +  +SP + Y ESL
Sbjct: 406 TRSTSGKGFETKISINLDSDIKLLNTLSPLETFFWC-CSFPSTASTSSPFSYYPESL 461


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/89 (23%), Positives = 40/89 (44%)
 Frame = -3

Query: 742  FALLCTSNVPFKSIPFTNGVWAKKTNLVGETSNSSLETRSAPREE*HRLTDDSRIYRFGS 563
            F++  +S++P  +I FTN +  + T      SNS    ++ P     +  +     R  +
Sbjct: 1298 FSVATSSDIPKANIDFTNDISTQNTFPASPVSNSGFSRQTYPNISQRQGVNMLSHKRKSA 1357

Query: 562  GTLKTAFDLMTTSLSSLGWKNPISAAIAS 476
             T    F     + S+ G   PIS++I++
Sbjct: 1358 STSDRRF---VNASSTSGMNMPISSSISA 1383


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 454 LMRYLTEVLCPCFFLSRSRQASPLNIYGESLLVGYVTVV 338
           L+R+     CP +F+ +S + S +  +  S L GY  +V
Sbjct: 39  LVRHNALTFCPYYFIEKSGKGSVVYFHPTSDLCGYKNIV 77


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
 Frame = +3

Query: 267  NTPEFGNYASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRY 446
            + P F  + S V     SR + L   +T PT+  + Y    EA L    +    K  +  
Sbjct: 734  SNPAFAKFVSDVERLKESRKLELNGYLTKPTTRLARYPLLLEAVLKYTDEGNPDKQDIPK 793

Query: 447  LINI----SNNRNQEAIAAEIGFFHPRLDKEVVIK 539
            +INI     +  N E+  AE  F    L++++V K
Sbjct: 794  VINIVRGFLSRLNVESGKAENKFNLFHLNQQLVFK 828


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 25/88 (28%), Positives = 37/88 (42%)
 Frame = +3

Query: 285 NYASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINISN 464
           N  + V    P+   A  T  TYP+ S    + S +A +DL K  +  K S      +  
Sbjct: 214 NVLTAVKTVFPNVRYAYTTIPTYPSGSIGFVVASKDASIDLSKPLR--KWSPEEENKLCK 271

Query: 465 NRNQEAIAAEIGFFHPRLDKEVVIKSNA 548
             N E  AA   F  P   ++VV K+ +
Sbjct: 272 YYNSEIHAA--SFVLPTFARDVVDKATS 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,611
Number of Sequences: 5004
Number of extensions: 71110
Number of successful extensions: 210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)