Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1002
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0137 - 31937541-31939892                                         32   0.42 
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668...    29   3.9  
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272...    29   3.9  
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85...    29   5.2  
12_02_0674 - 21745321-21746223,21746229-21747608                       28   9.1  
11_03_0164 + 10972526-10972723,10972818-10973549,10974148-109742...    28   9.1  

>03_06_0137 - 31937541-31939892
          Length = 783

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 417 KQGHKTSVRYLINISNNRNQEAIAAEIGFFHP--RLDKEVVIKSNAVFKVPEPNRYILES 590
           K G   S R +  + NNR+  A  A I  +    R D+ + +  + +   PEPN Y L +
Sbjct: 356 KIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAA 415

Query: 591 SVSLCHS 611
            +S+C S
Sbjct: 416 VLSVCAS 422


>04_04_0803 -
           28165828-28166136,28166257-28166505,28166628-28166889,
           28168116-28168204,28168286-28168342,28168443-28168595
          Length = 372

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 252 HLNAYNTPEFGNYASGVVFYLPSRVMALETTVTYPTSS 365
           HL+AYN PE   +  GV+  +P   +    ++  P +S
Sbjct: 43  HLSAYNNPEEQKFVLGVILMVPCYAIESYVSLINPNTS 80


>02_05_0259 -
           27226378-27226398,27226643-27226813,27227063-27227284,
           27227508-27227668,27227933-27227996,27228002-27228194,
           27228499-27228587,27228668-27228852,27229671-27229779,
           27229880-27229936,27230023-27230175
          Length = 474

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 252 HLNAYNTPEFGNYASGVVFYLPSRVMALETTVTYPTSS 365
           HL+AYN PE   +  GV+  +P   +    ++  P +S
Sbjct: 43  HLSAYNNPEEQKFVLGVILMVPCYAVESYVSLVNPDTS 80


>07_01_0115 +
           851505-852368,852611-852730,853000-853020,853253-853369,
           853466-853555,853730-853837,853897-853932,853933-854022
          Length = 481

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 577 YRFGSGTLKTAFDLMTTSLSSLGWKNPISAAIAS 476
           +R G  T   AFD MT   +S+   NP+ AA++S
Sbjct: 72  FRGGVATRSVAFDEMTPRRASVDVPNPLRAALSS 105


>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 193 SETSSRIWKPISGKIPSVRRSNPALTTLTMTPGFDKSIL 77
           S  S+R     +GKIPS  R+NP  T  +  P   ++ L
Sbjct: 510 STASTRELSTATGKIPSTPRTNPLSTATSKIPSTPRTSL 548


>11_03_0164 +
           10972526-10972723,10972818-10973549,10974148-10974285,
           10974522-10974991,10975069-10975239,10975320-10975602,
           10975682-10975795
          Length = 701

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 184 SSRIWKPISGKIPSVRRSNPALTTLTMTPGFDKSILDWISIAAHCFFSSQ 35
           SS  WK +  K+P V   +PA+   T       +++D+I     C F+ Q
Sbjct: 512 SSLTWKHVHRKVPHVALLDPAVVNETTLKNDQANMVDYIK---DCLFACQ 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,843,103
Number of Sequences: 37544
Number of extensions: 458457
Number of successful extensions: 1139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)