BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-1002 (750 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38) 31 0.76 SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00 SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00 SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3 SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0 SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0 SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0 SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3 SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17) 29 5.3 SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25) 28 7.0 SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 28 9.3 SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1) 28 9.3 SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 9.3 >SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38) Length = 450 Score = 31.5 bits (68), Expect = 0.76 Identities = 21/69 (30%), Positives = 34/69 (49%) Frame = +3 Query: 534 IKSNAVFKVPEPNRYILESSVSLCHSSLGADRVSKLLLDVSPTKFVFLAQTPFVKGIDLK 713 ++S AV + P P + +S + S + S +SP+ F+AQ+P + Sbjct: 178 VQSPAVMRAPTPAPHPSPASQPVAPSPVCIPVQSPAPNMMSPSPQQFIAQSPAPTSVPTP 237 Query: 714 GTLDVQSKA 740 GTL+VQS A Sbjct: 238 GTLNVQSPA 246 >SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 868 Score = 31.1 bits (67), Expect = 1.00 Identities = 21/87 (24%), Positives = 39/87 (44%) Frame = +3 Query: 87 LSKPGVIVNVVNAGFDLRTLGILPEIGFQMRDEVSDNRFPRFTLDLHVNTKEKKYHLNAY 266 LS+P + + F + L +I F+ R + +DN++ + +N + Y+ N+Y Sbjct: 67 LSRPSTELKDDSVTFKMEELNWGYDITFEFRVKFNDNKYLKPARHHVINHAQLSYY-NSY 125 Query: 267 NTPEFGNYASGVVFYLPSRVMALETTV 347 + G A G F P R + T + Sbjct: 126 SVDASGAVAKGNFFSEPMRTLDFVTDI 152 >SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1013 Score = 31.1 bits (67), Expect = 1.00 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +1 Query: 352 TQPAVTLRIYSAERPASTWIRRNRDTRPLLDTSSTSPIIGIRKLLL 489 T+PA TL I+ E PA+ I R+T L PI+ +R+ +L Sbjct: 852 TRPAYTLIIHERETPAALIIIHARETNAALIIIHLLPIVRVRETVL 897 >SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1185 Score = 30.7 bits (66), Expect = 1.3 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%) Frame = -3 Query: 304 TTPEA*FPN-SGVL*ALRWYFFSLVLT*RSKVNLGKRLSETSSRI----WKPISGKIPSV 140 + P+ FP+ S + W S T K GK +S +SS I KP++ + P+V Sbjct: 620 SAPDNFFPSRSSTITGSSWSSSSTTTTKHVKTVNGKVVSSSSSTISTSSGKPMTSEGPTV 679 Query: 139 RRSNPALTTLTM 104 SNP +T+ +M Sbjct: 680 TSSNPTVTSSSM 691 >SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1524 Score = 29.5 bits (63), Expect = 3.0 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +3 Query: 477 EAIAAEIGFFHPRLDKEVVIKSNAVFKVPEPN 572 EA+ AEI P++++EVV++S A EP+ Sbjct: 523 EALKAEIDALKPKIEEEVVVQSAAPVAAGEPD 554 >SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4527 Score = 29.1 bits (62), Expect = 4.0 Identities = 17/71 (23%), Positives = 27/71 (38%) Frame = +3 Query: 291 ASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINISNNR 470 +SG PS T +Y + + Y GE C+D+D+ G T + +N Sbjct: 641 SSGAHTCAPSGSTCTNTVGSYTCACNVGYTGDGETCVDIDECSAGSHTCAPSVSTCTNTV 700 Query: 471 NQEAIAAEIGF 503 A G+ Sbjct: 701 GSFTCACNAGY 711 >SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 771 Score = 29.1 bits (62), Expect = 4.0 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -3 Query: 700 PFTNGVWAKKTNLVGETSNSSLETRSAPREE 608 P + W K +++ ++SNS+LE SA RE+ Sbjct: 91 PIPSYEWLKDGHVITDSSNSTLEIESASRED 121 >SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1520 Score = 28.7 bits (61), Expect = 5.3 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = -2 Query: 578 ISIWFRDLEDCIRLDDYLLIKSWVEESDFGSNSFLIPIIGDVDEVSN 438 +S W R++ D D+ ++ WV+++ G S++ I DVDE+ + Sbjct: 50 LSCWRRNIADVTVDDERTKLREWVDKTKKG--SWISRWISDVDEIES 94 >SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17) Length = 1775 Score = 28.7 bits (61), Expect = 5.3 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = +3 Query: 279 FGNYASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINI 458 F N S +V+ P R + T VT+ T+ + + L ++ + T V Sbjct: 1519 FPNTESSLVYTKPQRPLTANTFVTFQTTQVEQLVKTHNE--GLPRRSRDDDTGVDENAGD 1576 Query: 459 SNNRNQEAIAAEIGFFHPRL--DKEVVIK 539 ++ + ++ A +GFFH + D++ +K Sbjct: 1577 DDDDDDDSDAPALGFFHEQFSPDRDQYVK 1605 >SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25) Length = 1595 Score = 28.3 bits (60), Expect = 7.0 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = -2 Query: 392 LSAEYIRRVTAGWVRYSGL*SHNPGRKIENDSRSIVSELRCIISVEMVLLLLGVDVKI 219 L+ YIR G++R + I+N S+++ S+++C V LL G+ +KI Sbjct: 1501 LTGSYIREKDQGYIREIFYECNLQKVTIDNFSQNVTSKIKCPQRKTNVALLKGIVMKI 1558 >SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) Length = 440 Score = 27.9 bits (59), Expect = 9.3 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 31 FTARRRSSAPQLRSNPRLICRNPESSSTWL 120 +TAR R P +RS R+I N + + WL Sbjct: 87 YTARTRQMGPPVRSEFRVIVENLSTRAKWL 116 >SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1) Length = 325 Score = 27.9 bits (59), Expect = 9.3 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = -3 Query: 718 VPFKSIPFTNGVWAKKTNLVGETSNSSLETRSAPREE*HRLTDDSRIYRFGSGTLK 551 +P K+ + +W+++ L S+S + APR H SR+Y F GTL+ Sbjct: 155 IPSKNGGESAPLWSQRQELHPPLSDSPCQ---APRYNGHSTITGSRLYYFAMGTLR 207 >SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 376 Score = 27.9 bits (59), Expect = 9.3 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +3 Query: 561 PEPNRYILESS-VSLCHSSLGADRVSKLLLDVSPTKFV 671 P+P R+I++ V+ HS V K +SPT FV Sbjct: 101 PDPRRHIIKQEHVTAAHSQSSPSTVWKAWAPLSPTSFV 138 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,975,778 Number of Sequences: 59808 Number of extensions: 518134 Number of successful extensions: 1408 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1274 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1408 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2034222073 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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