Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1002
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)                31   0.76 
SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.00 
SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.00 
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               29   5.3  
SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)               28   7.0  
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 28   9.3  
SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1)                   28   9.3  
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   9.3  

>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
          Length = 450

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +3

Query: 534 IKSNAVFKVPEPNRYILESSVSLCHSSLGADRVSKLLLDVSPTKFVFLAQTPFVKGIDLK 713
           ++S AV + P P  +   +S  +  S +     S     +SP+   F+AQ+P    +   
Sbjct: 178 VQSPAVMRAPTPAPHPSPASQPVAPSPVCIPVQSPAPNMMSPSPQQFIAQSPAPTSVPTP 237

Query: 714 GTLDVQSKA 740
           GTL+VQS A
Sbjct: 238 GTLNVQSPA 246


>SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 21/87 (24%), Positives = 39/87 (44%)
 Frame = +3

Query: 87  LSKPGVIVNVVNAGFDLRTLGILPEIGFQMRDEVSDNRFPRFTLDLHVNTKEKKYHLNAY 266
           LS+P   +   +  F +  L    +I F+ R + +DN++ +      +N  +  Y+ N+Y
Sbjct: 67  LSRPSTELKDDSVTFKMEELNWGYDITFEFRVKFNDNKYLKPARHHVINHAQLSYY-NSY 125

Query: 267 NTPEFGNYASGVVFYLPSRVMALETTV 347
           +    G  A G  F  P R +   T +
Sbjct: 126 SVDASGAVAKGNFFSEPMRTLDFVTDI 152


>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1013

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 352 TQPAVTLRIYSAERPASTWIRRNRDTRPLLDTSSTSPIIGIRKLLL 489
           T+PA TL I+  E PA+  I   R+T   L      PI+ +R+ +L
Sbjct: 852 TRPAYTLIIHERETPAALIIIHARETNAALIIIHLLPIVRVRETVL 897


>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1185

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = -3

Query: 304 TTPEA*FPN-SGVL*ALRWYFFSLVLT*RSKVNLGKRLSETSSRI----WKPISGKIPSV 140
           + P+  FP+ S  +    W   S   T   K   GK +S +SS I     KP++ + P+V
Sbjct: 620 SAPDNFFPSRSSTITGSSWSSSSTTTTKHVKTVNGKVVSSSSSTISTSSGKPMTSEGPTV 679

Query: 139 RRSNPALTTLTM 104
             SNP +T+ +M
Sbjct: 680 TSSNPTVTSSSM 691


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 477 EAIAAEIGFFHPRLDKEVVIKSNAVFKVPEPN 572
           EA+ AEI    P++++EVV++S A     EP+
Sbjct: 523 EALKAEIDALKPKIEEEVVVQSAAPVAAGEPD 554


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/71 (23%), Positives = 27/71 (38%)
 Frame = +3

Query: 291 ASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINISNNR 470
           +SG     PS      T  +Y  + +  Y   GE C+D+D+   G  T    +   +N  
Sbjct: 641 SSGAHTCAPSGSTCTNTVGSYTCACNVGYTGDGETCVDIDECSAGSHTCAPSVSTCTNTV 700

Query: 471 NQEAIAAEIGF 503
                A   G+
Sbjct: 701 GSFTCACNAGY 711


>SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 700 PFTNGVWAKKTNLVGETSNSSLETRSAPREE 608
           P  +  W K  +++ ++SNS+LE  SA RE+
Sbjct: 91  PIPSYEWLKDGHVITDSSNSTLEIESASRED 121


>SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1520

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 578 ISIWFRDLEDCIRLDDYLLIKSWVEESDFGSNSFLIPIIGDVDEVSN 438
           +S W R++ D    D+   ++ WV+++  G  S++   I DVDE+ +
Sbjct: 50  LSCWRRNIADVTVDDERTKLREWVDKTKKG--SWISRWISDVDEIES 94


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = +3

Query: 279  FGNYASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINI 458
            F N  S +V+  P R +   T VT+ T+     + +      L ++ +   T V      
Sbjct: 1519 FPNTESSLVYTKPQRPLTANTFVTFQTTQVEQLVKTHNE--GLPRRSRDDDTGVDENAGD 1576

Query: 459  SNNRNQEAIAAEIGFFHPRL--DKEVVIK 539
             ++ + ++ A  +GFFH +   D++  +K
Sbjct: 1577 DDDDDDDSDAPALGFFHEQFSPDRDQYVK 1605


>SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)
          Length = 1595

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -2

Query: 392  LSAEYIRRVTAGWVRYSGL*SHNPGRKIENDSRSIVSELRCIISVEMVLLLLGVDVKI 219
            L+  YIR    G++R      +     I+N S+++ S+++C      V LL G+ +KI
Sbjct: 1501 LTGSYIREKDQGYIREIFYECNLQKVTIDNFSQNVTSKIKCPQRKTNVALLKGIVMKI 1558


>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 31  FTARRRSSAPQLRSNPRLICRNPESSSTWL 120
           +TAR R   P +RS  R+I  N  + + WL
Sbjct: 87  YTARTRQMGPPVRSEFRVIVENLSTRAKWL 116


>SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1)
          Length = 325

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -3

Query: 718 VPFKSIPFTNGVWAKKTNLVGETSNSSLETRSAPREE*HRLTDDSRIYRFGSGTLK 551
           +P K+   +  +W+++  L    S+S  +   APR   H     SR+Y F  GTL+
Sbjct: 155 IPSKNGGESAPLWSQRQELHPPLSDSPCQ---APRYNGHSTITGSRLYYFAMGTLR 207


>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 376

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 561 PEPNRYILESS-VSLCHSSLGADRVSKLLLDVSPTKFV 671
           P+P R+I++   V+  HS      V K    +SPT FV
Sbjct: 101 PDPRRHIIKQEHVTAAHSQSSPSTVWKAWAPLSPTSFV 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,975,778
Number of Sequences: 59808
Number of extensions: 518134
Number of successful extensions: 1408
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)