Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1002
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal enha...    29   3.5  
AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal en...    29   3.5  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily a...    28   6.2  
AF043703-2|AAK21501.2|   68|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform a protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +1

Query: 394 PASTWIRRNRDTRPL--LDTSSTSPIIGIRKLLLP----KSDSSTQ 513
           PA   +   +D +PL  L    TSP+I    LLLP    K DSSTQ
Sbjct: 346 PAPLQVLNLKDLKPLPPLANIQTSPVIQAANLLLPVAALKKDSSTQ 391


>AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal
           enhancer binding protein-1 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +1

Query: 394 PASTWIRRNRDTRPL--LDTSSTSPIIGIRKLLLP----KSDSSTQ 513
           PA   +   +D +PL  L    TSP+I    LLLP    K DSSTQ
Sbjct: 344 PAPLQVLNLKDLKPLPPLANIQTSPVIQAANLLLPVAALKKDSSTQ 389


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 270 TPEFGNYASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEA 395
           TP F  +      Y P+    L TT T  T+SD+P + S  A
Sbjct: 30  TPSFNTFKYSPSSYTPNISRNLNTTSTGSTTSDTPKLSSSSA 71


>AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 63 protein.
          Length = 604

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 202 KRLSETSSRIWKPISGKIPSVRRSNPALTTLTMTPGFDKS 83
           + +  +S+ I KP+  +IPS +    +L TL+ TPG  ++
Sbjct: 305 EEVENSSNLIRKPLKMEIPSPKIQKISLFTLSYTPGLPRN 344


>AF043703-2|AAK21501.2|   68|Caenorhabditis elegans Hypothetical
           protein W10C8.3 protein.
          Length = 68

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 100 ESSSTWLTPDSIFVRLVSYLKLASKCVTRSPTIAS 204
           ES+ +WL+P +  +R    +   S+CV+   TIA+
Sbjct: 2   ESADSWLSPRNFQIRQARKMDEFSRCVSLRATIAT 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,590,967
Number of Sequences: 27780
Number of extensions: 385316
Number of successful extensions: 1087
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)