Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1002
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48040.1 68415.m06013 expressed protein                             28   5.8  
At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR...    28   7.6  

>At2g48040.1 68415.m06013 expressed protein 
          Length = 294

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 67  RSNPRLICRNPESSSTWLTPDSIFVRLVSYL 159
           +++ +LIC   ++S  WL PD++  R +  L
Sbjct: 63  KNDIQLICCQADASVLWLVPDTVVTRFIQSL 93


>At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.; closest
            homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
          Length = 1449

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 309  YLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYL-INISNNRNQ 476
            Y   R      TVT P SS S      +ACL +D   +G K   RYL +N   N  Q
Sbjct: 1241 YFTYRAYGDSLTVTLPRSSLSQSFLRFKACLVVDPLSEG-KGFYRYLEVNFGFNGKQ 1296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,963,526
Number of Sequences: 28952
Number of extensions: 376568
Number of successful extensions: 1106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)