Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1001
(423 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 82 3e-17
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 81 5e-17
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 28 0.69
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 27 0.91
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 27 0.91
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 27 0.91
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 1.2
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 26 2.8
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 26 2.8
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 3.7
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 4.8
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 4.8
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 4.8
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c... 25 6.4
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 6.4
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 24 8.5
>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 99
Score = 82.2 bits (194), Expect = 3e-17
Identities = 41/74 (55%), Positives = 53/74 (71%)
Frame = +1
Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 297
RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DKRA K K+RLGT RAK
Sbjct: 23 RPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAK 82
Query: 298 RKREELSNVLAQMR 339
K EEL++V+ R
Sbjct: 83 GKIEELTSVIQSSR 96
>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 99
Score = 81.4 bits (192), Expect = 5e-17
Identities = 41/74 (55%), Positives = 53/74 (71%)
Frame = +1
Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 297
RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DKRA K K+RLGT RAK
Sbjct: 23 RPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAK 82
Query: 298 RKREELSNVLAQMR 339
K EEL++V+ R
Sbjct: 83 GKIEELTSVIQSSR 96
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.9 bits (59), Expect = 0.69
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 366 MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLV 241
+V SL G L + A+FFT PL ++VCA + + + ++
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 0.91
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 302 SVKNLATCSLR*GRQPPRLITITI 373
SVKNL SL+ PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 27.5 bits (58), Expect = 0.91
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 79 LAARVSQYKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 222
L + ++Q ++ RPA L+ L+T SKFV + V Y K ++
Sbjct: 14 LPSILAQRSSLLARPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 27.5 bits (58), Expect = 0.91
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 184 VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLAQMR 339
++ HA ++ L+VSKD KRR+ THI + +R LS V Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Frame = +3
Query: 174 STRSCRTRSI*EEGY---GVT*GVKRQACSEVLEATI 275
+TR+C T+S+ EEG+ V+ +KR+ +++L+A I
Sbjct: 928 ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 2.8
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 134 FSLAGLILMALYCDTLAASGYFSCFVAFSQAYCDF-KTRSHDFGL 3
FSL G IL ++C T S + A+ +++ F + RS +F L
Sbjct: 147 FSLMGWILFGIWCLTCFLSSFI--LYAYHESWTKFARERSQEFSL 189
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 2.8
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 172 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 303
++RE +G + K + ++ K ALKF+ R+L H+R +R+
Sbjct: 35 IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.4 bits (53), Expect = 3.7
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = +1
Query: 220 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 336
+LLK ++ + K K+RL +I K K+EE+++++A++
Sbjct: 75 QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 4.8
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 387 FIYHLMVMVMSLGGCLPHLSEHVAKFFTLPLGA-DVCAQSSLQELQSTLVF*HLK*LHSP 211
++ M + +GG + SEHV K F L V ++ ++ S + LK + S
Sbjct: 116 YLSKYMELSKKIGGLIAEQSEHVEKAFNLLRQVLSVALKAQKPDMDSPELLEFLKPIQSE 175
Query: 210 LLILS 196
LL ++
Sbjct: 176 LLTIT 180
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 4.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -2
Query: 245 LSFDTLSNSIALFSY*ACPTTS 180
+S+D+LS+ +++ S+ CP T+
Sbjct: 79 MSYDSLSDDVSVLSFLDCPLTT 100
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 4.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 233 TLSNSIALFSY*ACPTTSRTKSRTNLECF 147
T+++S LF+ A T+ TKS N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878
>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 278
Score = 24.6 bits (51), Expect = 6.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 104 LYCDTLAASGYFSC 63
LYCD + YFSC
Sbjct: 109 LYCDDFTGADYFSC 122
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 24.6 bits (51), Expect = 6.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 95 DTLAASGYFSCFVAFSQAYCDFKTRSHDFG 6
D A + S F AFSQ Y + +S+DFG
Sbjct: 319 DLRLACCFESHFFAFSQHYPRYLEQSNDFG 348
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 24.2 bits (50), Expect = 8.5
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Frame = +1
Query: 49 EKATKQLKYPLAARVSQYKAIRIR--PARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 222
E+ KQ A R Q +R++ P L+ Q S+ R+L ++ Q EK+ E
Sbjct: 420 EEQFKQNVVNEAKRYLQETILRLQAIPYHLQVGQAWTSESERELEKK---KEQVEKKQEE 476
Query: 223 LLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 336
L++ FL + +AKRK E+ +L+ +
Sbjct: 477 LMQTRIVLEEQVFLVENMIEDAKAKRKFSEVETLLSSL 514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,480,506
Number of Sequences: 5004
Number of extensions: 26592
Number of successful extensions: 77
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -