Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1001
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...    98   2e-21
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     98   3e-21
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    29   1.2  
09_01_0024 + 438288-438542,439020-439069,440096-440351                 29   2.0  
03_06_0682 - 35516081-35518303                                         28   3.6  
11_02_0038 - 7631462-7634428,7635975-7636250                           27   4.7  
03_05_0169 + 21474655-21474771,21474879-21474971,21475553-214756...    27   8.2  

>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 48/74 (64%), Positives = 56/74 (75%)
 Frame = +1

Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 297
           RP+  KG  TK   FVR L+REVVG A YEKR  ELLKV KDKRALK  KR+LGTH RAK
Sbjct: 28  RPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 87

Query: 298 RKREELSNVLAQMR 339
           +KREE++ V+ +MR
Sbjct: 88  KKREEMAGVIRKMR 101


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 48/74 (64%), Positives = 56/74 (75%)
 Frame = +1

Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 297
           RP+  KG  TK   FVR+L+REV G A YEKR  ELLKV KDKRALK  KR+LGTH RAK
Sbjct: 28  RPSDRKGKSTKRVTFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 87

Query: 298 RKREELSNVLAQMR 339
           +KREE++ VL +MR
Sbjct: 88  KKREEMAGVLRKMR 101


>04_04_1144 +
           31222556-31222633,31223238-31227665,31227724-31227789,
           31227790-31228014,31228097-31228255,31228393-31228551,
           31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 22/94 (23%), Positives = 48/94 (51%)
 Frame = +1

Query: 49  EKATKQLKYPLAARVSQYKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELL 228
           E   +Q +  ++    + +A + + A L+ +    S+  ++LV E +G    EK+ +ELL
Sbjct: 621 EADLEQYRSKVSQLSDELEAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELL 679

Query: 229 KVSKDKRALKFLKRRLGTHIRAKRKREELSNVLA 330
            +  +++  ++LK +       +R + + S VLA
Sbjct: 680 VLEYEEKTEEYLKEKQSLE---ERLQSQESKVLA 710


>09_01_0024 + 438288-438542,439020-439069,440096-440351
          Length = 186

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +1

Query: 196 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 321
           A++E R  E LK ++++ A K LKR+     + ++KR + +N
Sbjct: 122 AEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163


>03_06_0682 - 35516081-35518303
          Length = 740

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +1

Query: 121 PARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK----VSKDKRALKFLKRRLGTHI 288
           P  +  L+  +  F+++++     +++ EKR  ELL+    ++K           LG+ +
Sbjct: 324 PKEVHHLKDLNENFIKEIIERSAFNSEEEKRQSELLEMVGDIAKKCSGSPLAATALGSTL 383

Query: 289 RAKRKREELSNVL 327
           R K  ++E   +L
Sbjct: 384 RTKTTKKEWEAIL 396


>11_02_0038 - 7631462-7634428,7635975-7636250
          Length = 1080

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 241 DKRALKFLKRRLGTHIRAKRKREELSNV 324
           DK+ LKFL  R  TH +     E+++N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818


>03_05_0169 +
           21474655-21474771,21474879-21474971,21475553-21475642,
           21475728-21475811,21476088-21476252,21476995-21477182,
           21477363-21477435,21477766-21477819,21478019-21478276,
           21478891-21479097,21479293-21479396,21479809-21479953,
           21480108-21480242,21480610-21480783
          Length = 628

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
 Frame = +1

Query: 79  LAARVSQYKAIRIR---PARLKGLQTKHSKFVRDLVR----EVVGHAQYEKRAM--ELLK 231
           +  R+S+Y+   +R   PARL   Q   S     ++R     + G  + E + +  +LLK
Sbjct: 238 IVERLSRYRTKLVRLGHPARLLP-QVLDSALDAQVLRADNSSLAGDIRKEMKVLNSKLLK 296

Query: 232 VSKDKRALKFLKRRLGTHIRAKRKREELS 318
            +KDK   + +++ L T  + +RKR++L+
Sbjct: 297 -AKDKNTKRDIRKELRTLAKEERKRQQLA 324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,827,679
Number of Sequences: 37544
Number of extensions: 178297
Number of successful extensions: 423
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)