Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1001
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...   101   2e-22
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    30   0.79 
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    30   0.79 
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    29   1.0  
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    29   1.4  
Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical ...    27   7.3  
U50135-5|AAN63430.2|  346|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AL132948-29|CAD31829.1|  314|Caenorhabditis elegans Hypothetical...    26   9.7  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score =  101 bits (242), Expect = 2e-22
 Identities = 47/78 (60%), Positives = 61/78 (78%)
 Frame = +1

Query: 109 IRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHI 288
           ++ R  R KG+ +K +K VR+LVRE+ G A YE+R +E+L++SKDKRALKFLKRR+GTH 
Sbjct: 24  VKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHR 83

Query: 289 RAKRKREELSNVLAQMRK 342
           RAK KREEL NV+   RK
Sbjct: 84  RAKGKREELQNVIIAQRK 101


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 20/66 (30%), Positives = 36/66 (54%)
 Frame = +1

Query: 52  KATKQLKYPLAARVSQYKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK 231
           KA KQ K       ++ KA  I    L+  Q +HS+ VR++ +      + EK+ +EL++
Sbjct: 710 KARKQKKMQRKLESAKKKAEGI----LENDQMEHSEKVREMKKVYANATRKEKKKVELVR 765

Query: 232 VSKDKR 249
           ++K K+
Sbjct: 766 MTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 20/66 (30%), Positives = 36/66 (54%)
 Frame = +1

Query: 52  KATKQLKYPLAARVSQYKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK 231
           KA KQ K       ++ KA  I    L+  Q +HS+ VR++ +      + EK+ +EL++
Sbjct: 710 KARKQKKMQRKLESAKKKAEGI----LENDQMEHSEKVREMKKVYANATRKEKKKVELVR 765

Query: 232 VSKDKR 249
           ++K K+
Sbjct: 766 MTKGKK 771


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +1

Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 255
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +1

Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 255
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 115 IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 249
           ++  ++  L T    +   L+REV G   Y++R  E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184


>Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical
           protein F17B5.1a protein.
          Length = 777

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 124 ARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFL--KRRLGTHIRAK 297
           AR+K  + K  K + +  R+     +   +A E LK+ ++++  K L  +R+    +  K
Sbjct: 535 ARIKEEEEKQRKILEEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIK 594

Query: 298 RKREE 312
           RK EE
Sbjct: 595 RKAEE 599


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 163 VRDLVREVVGHAQYEKRAMELLKV 234
           +RD + EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


>AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical
           protein H23N18.4 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 172 LVREVVGHAQYEKRAMELLKV 234
           +V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454


>U50135-5|AAN63430.2|  346|Caenorhabditis elegans Hypothetical
           protein C52E12.6 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 238 KDKRALKF-LKRRLGTHIRAKRKREELSNVLAQM 336
           K+ R +KF   R L  H+R + K +ELS  +  M
Sbjct: 207 KECRGIKFRFNRELNEHVRLQHKSKELSCCVCNM 240


>AL132948-29|CAD31829.1|  314|Caenorhabditis elegans Hypothetical
           protein Y39B6A.37 protein.
          Length = 314

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 60  KTTKISAGRKGITVQSHQN*AS*TKGSSNETLQVCP*FSTRSCRTRSI*EEGYGV 224
           KT K + G++G+T++ H+N    TK    E LQ+   FS  +         GYGV
Sbjct: 23  KTLKNALGKQGLTMEQHENAQKSTKPC--EILQIDT-FSIDNSNLEDGWYVGYGV 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,200,661
Number of Sequences: 27780
Number of extensions: 149263
Number of successful extensions: 363
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)