Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1001
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...    97   3e-21
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...    97   3e-21
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            97   6e-21
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    74   3e-14
At5g05440.1 68418.m00586 expressed protein low similarity to cyt...    26   9.1  
At3g56790.1 68416.m06316 RNA splicing factor-related contains we...    26   9.1  

>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 97.5 bits (232), Expect = 3e-21
 Identities = 47/74 (63%), Positives = 57/74 (77%)
 Frame = +1

Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 297
           RP   KG  +K + F+R+L++EV G A YEKR  ELLKV KDKRALK  KR+LGTH RAK
Sbjct: 24  RPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 83

Query: 298 RKREELSNVLAQMR 339
           RKREE+S+VL +MR
Sbjct: 84  RKREEMSSVLRKMR 97


>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score = 97.5 bits (232), Expect = 3e-21
 Identities = 47/74 (63%), Positives = 57/74 (77%)
 Frame = +1

Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 297
           RP   KG  +K + F+R+L++EV G A YEKR  ELLKV KDKRALK  KR+LGTH RAK
Sbjct: 28  RPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 87

Query: 298 RKREELSNVLAQMR 339
           RKREE+S+VL +MR
Sbjct: 88  RKREEMSSVLRKMR 101


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score = 96.7 bits (230), Expect = 6e-21
 Identities = 48/74 (64%), Positives = 56/74 (75%)
 Frame = +1

Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 297
           RP   KG  +K + F+R L+REV G A YEKR  ELLKV KDKRALK  KR+LGTH RAK
Sbjct: 28  RPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 87

Query: 298 RKREELSNVLAQMR 339
           RKREE+S+VL +MR
Sbjct: 88  RKREEMSSVLRKMR 101


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 40/74 (54%), Positives = 51/74 (68%)
 Frame = +1

Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 297
           RP   KG  +K + F+R+L++EV G A YEKR  ELLKV+         KR+LGTH RAK
Sbjct: 28  RPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVA---------KRKLGTHKRAK 78

Query: 298 RKREELSNVLAQMR 339
           RKREE+S+VL +MR
Sbjct: 79  RKREEMSSVLRKMR 92


>At5g05440.1 68418.m00586 expressed protein low similarity to
           cytokinin-specific binding protein [Vigna radiata]
           GI:4190976
          Length = 203

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 336 HLSEHVAKFFTLPLGADVCAQSSLQELQS 250
           H+ EHVA   T  +G D C  S +Q + +
Sbjct: 40  HVPEHVAMHHTHDVGPDQCCSSVVQMIHA 68


>At3g56790.1 68416.m06316 RNA splicing factor-related contains weak
           similarity to U4/U6-associated RNA splicing factor [Homo
           sapiens] gi|2853287|gb|AAC09069
          Length = 206

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 205 EKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLA 330
           EK+   L +V+K+K   K +++ L    ++K K   L  VLA
Sbjct: 155 EKKLQTLRRVAKEKEKQKMIRQALFEPQKSKVKLSNLMKVLA 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,835,592
Number of Sequences: 28952
Number of extensions: 141554
Number of successful extensions: 351
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)