Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1000
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   4.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   4.6  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   4.6  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   6.0  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   6.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   6.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   6.0  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 129 VLDTPDGHYFTKKFLITFHCTIHV 58
           V++  +G Y     LI F C +H+
Sbjct: 259 VIEAINGFYGVHTLLILFSCLLHL 282


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 489 TPGGSSTSVLVPGAGSGN 542
           +P  S + +  PGAGSGN
Sbjct: 88  SPTVSGSEMSSPGAGSGN 105


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 489 TPGGSSTSVLVPGAGSGN 542
           +P  S + +  PGAGSGN
Sbjct: 88  SPTVSGSEMSSPGAGSGN 105


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 480 FRGTPGGSSTSVLVPGAGSG 539
           F G+PG +S + +  G G+G
Sbjct: 148 FLGSPGDASNASIGSGEGTG 167


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -1

Query: 564 ISHVTLAHFQSLHQV 520
           ++H+T+AHF+ +  V
Sbjct: 202 VTHITMAHFKIIQVV 216


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 480 FRGTPGGSSTSVLVPGAGSG 539
           F G+PG +S + +  G G+G
Sbjct: 304 FLGSPGDASNASIGSGEGTG 323


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 507 LKILQGYPGSILAADSDTLEVRQDDLVI 424
           L+ + G P S     S +  V+QDDL I
Sbjct: 137 LRCVNGIPVSSKTLASQSAYVQQDDLFI 164


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 507 LKILQGYPGSILAADSDTLEVRQDDLVI 424
           L+ + G P S     S +  V+QDDL I
Sbjct: 137 LRCVNGIPVSSKTLASQSAYVQQDDLFI 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,816
Number of Sequences: 336
Number of extensions: 2436
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)