Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1000
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1697 - 28795521-28797328,28797430-28797550                       31   0.70 
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266...    29   2.8  
10_08_0954 + 21779561-21779639,21779780-21779862,21786887-217869...    28   5.0  
07_01_1157 + 10954619-10954835,10956078-10957114                       28   5.0  
04_03_0075 + 10726807-10727721,10728756-10729496                       28   6.6  
03_06_0644 + 35253858-35254112,35254301-35254390,35254475-352545...    28   6.6  
01_05_0513 - 22864657-22867899                                         27   8.7  

>07_03_1697 - 28795521-28797328,28797430-28797550
          Length = 642

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -2

Query: 314 FSCLCMSSFFSICSIGNCGTS*GAESSLGSSRGA-SAPTALVGLSLPPSSKN 162
           FS L   +   +   G CGT+  A++  G+S+   SAP++L G  LPP SK+
Sbjct: 18  FSVLQEPTGAPVYQCGGCGTTLRAKNRTGNSQEVISAPSSL-GSGLPPHSKH 68


>01_01_0328 -
           2664412-2664535,2665388-2665465,2667784-2667895,
           2668344-2668410,2668473-2668562,2668672-2668787,
           2668999-2671924
          Length = 1170

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 465 DSDTLEVRQDDLVIVIIGDPEPSRLFKHGCRACFAAREXTHRLSAFRRLNIQ 310
           ++  L  R + LV++    P   RLF +GC    A  E  HR++  RR++I+
Sbjct: 843 NTGNLRGRSEQLVLM----PCLKRLFLNGCPKLRALPEDLHRIANLRRIHIE 890


>10_08_0954 +
           21779561-21779639,21779780-21779862,21786887-21786946,
           21786980-21787169,21787250-21787302,21787523-21787603,
           21787703-21787819
          Length = 220

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -1

Query: 339 LSAFRR-LNIQLPLYE*FLL---DLFDWKLRDFIRRGEFIRKL 223
           LSAFR  L + L +Y  + L   DLFD K R  I  G+F+R L
Sbjct: 81  LSAFRHNLILSLEIYTEWTLQIFDLFDVKKRGVIDFGDFVRAL 123


>07_01_1157 + 10954619-10954835,10956078-10957114
          Length = 417

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 244 APYEVPQFPIEQIEKKLLIQRQLNVKAA 327
           +PY  PQFP   +E+K+ I+R L V+ +
Sbjct: 141 SPYS-PQFPQNNLERKIQIRRMLQVQGS 167


>04_03_0075 + 10726807-10727721,10728756-10729496
          Length = 551

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
 Frame = +1

Query: 133 SRSPLIITDSFFDDGGSESPTSAVGAEAP-----RELPN---ELSAPYEVPQFPIEQIEK 288
           SR+   +TDS  +D  +E  T+    E+P      E+P+   E + P E P+ PI +   
Sbjct: 246 SRAMFALTDSLPEDEYAEEVTAVTAHESPETLLENEVPDFIKEEAEPCETPKLPIMEPHT 305

Query: 289 KLLIQR 306
            LL ++
Sbjct: 306 YLLTKK 311


>03_06_0644 +
           35253858-35254112,35254301-35254390,35254475-35254596,
           35254731-35254830,35254955-35255001,35255178-35255256,
           35255722-35255769
          Length = 246

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 492 PGGSSTSVLVPGAGSG-NAQALHG 560
           P G +T+VLVPG G+G +  AL G
Sbjct: 71  PAGDATTVLVPGCGAGYDVVALSG 94


>01_05_0513 - 22864657-22867899
          Length = 1080

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 175 GGSESPTSAVGAEAPRELPNELSAPYE 255
           GG  +P   V  EAPR+LP ++ AP E
Sbjct: 176 GGDNAPPPEVPPEAPRDLP-DIPAPTE 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,846,566
Number of Sequences: 37544
Number of extensions: 325037
Number of successful extensions: 1247
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)