BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-1000 (600 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1697 - 28795521-28797328,28797430-28797550 31 0.70 01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 29 2.8 10_08_0954 + 21779561-21779639,21779780-21779862,21786887-217869... 28 5.0 07_01_1157 + 10954619-10954835,10956078-10957114 28 5.0 04_03_0075 + 10726807-10727721,10728756-10729496 28 6.6 03_06_0644 + 35253858-35254112,35254301-35254390,35254475-352545... 28 6.6 01_05_0513 - 22864657-22867899 27 8.7 >07_03_1697 - 28795521-28797328,28797430-28797550 Length = 642 Score = 31.1 bits (67), Expect = 0.70 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = -2 Query: 314 FSCLCMSSFFSICSIGNCGTS*GAESSLGSSRGA-SAPTALVGLSLPPSSKN 162 FS L + + G CGT+ A++ G+S+ SAP++L G LPP SK+ Sbjct: 18 FSVLQEPTGAPVYQCGGCGTTLRAKNRTGNSQEVISAPSSL-GSGLPPHSKH 68 >01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895, 2668344-2668410,2668473-2668562,2668672-2668787, 2668999-2671924 Length = 1170 Score = 29.1 bits (62), Expect = 2.8 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = -1 Query: 465 DSDTLEVRQDDLVIVIIGDPEPSRLFKHGCRACFAAREXTHRLSAFRRLNIQ 310 ++ L R + LV++ P RLF +GC A E HR++ RR++I+ Sbjct: 843 NTGNLRGRSEQLVLM----PCLKRLFLNGCPKLRALPEDLHRIANLRRIHIE 890 >10_08_0954 + 21779561-21779639,21779780-21779862,21786887-21786946, 21786980-21787169,21787250-21787302,21787523-21787603, 21787703-21787819 Length = 220 Score = 28.3 bits (60), Expect = 5.0 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 4/43 (9%) Frame = -1 Query: 339 LSAFRR-LNIQLPLYE*FLL---DLFDWKLRDFIRRGEFIRKL 223 LSAFR L + L +Y + L DLFD K R I G+F+R L Sbjct: 81 LSAFRHNLILSLEIYTEWTLQIFDLFDVKKRGVIDFGDFVRAL 123 >07_01_1157 + 10954619-10954835,10956078-10957114 Length = 417 Score = 28.3 bits (60), Expect = 5.0 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +1 Query: 244 APYEVPQFPIEQIEKKLLIQRQLNVKAA 327 +PY PQFP +E+K+ I+R L V+ + Sbjct: 141 SPYS-PQFPQNNLERKIQIRRMLQVQGS 167 >04_03_0075 + 10726807-10727721,10728756-10729496 Length = 551 Score = 27.9 bits (59), Expect = 6.6 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Frame = +1 Query: 133 SRSPLIITDSFFDDGGSESPTSAVGAEAP-----RELPN---ELSAPYEVPQFPIEQIEK 288 SR+ +TDS +D +E T+ E+P E+P+ E + P E P+ PI + Sbjct: 246 SRAMFALTDSLPEDEYAEEVTAVTAHESPETLLENEVPDFIKEEAEPCETPKLPIMEPHT 305 Query: 289 KLLIQR 306 LL ++ Sbjct: 306 YLLTKK 311 >03_06_0644 + 35253858-35254112,35254301-35254390,35254475-35254596, 35254731-35254830,35254955-35255001,35255178-35255256, 35255722-35255769 Length = 246 Score = 27.9 bits (59), Expect = 6.6 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Frame = +3 Query: 492 PGGSSTSVLVPGAGSG-NAQALHG 560 P G +T+VLVPG G+G + AL G Sbjct: 71 PAGDATTVLVPGCGAGYDVVALSG 94 >01_05_0513 - 22864657-22867899 Length = 1080 Score = 27.5 bits (58), Expect = 8.7 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 175 GGSESPTSAVGAEAPRELPNELSAPYE 255 GG +P V EAPR+LP ++ AP E Sbjct: 176 GGDNAPPPEVPPEAPRDLP-DIPAPTE 201 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,846,566 Number of Sequences: 37544 Number of extensions: 325037 Number of successful extensions: 1247 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1205 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1243 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1435654836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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