Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1000
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)                    56   2e-08
SB_13769| Best HMM Match : DUF1542 (HMM E-Value=1.1)                   29   2.9  
SB_24802| Best HMM Match : Phage_fiber_C (HMM E-Value=1.1)             28   5.0  
SB_19993| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)
          Length = 445

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 34/104 (32%), Positives = 58/104 (55%)
 Frame = +1

Query: 247 PYEVPQFPIEQIEKKLLIQRQLNVKAAECAQSVRXXXXXXXXXXXXXXXXXRLRVPDDDD 426
           P+E+P+ PIEQ+E K   + ++N++    ++ +R                    +     
Sbjct: 99  PFEIPEHPIEQLELK---KEEINLERQH-SKIMRGNSVSGPQLAGERSPSSTESLLGYGG 154

Query: 427 DEIILPHFQRVAISGEDTSGVPLEDLQQASSYLVQALEMRKRYM 558
               +P+F RV+ISG +TSGVP+E+L+QA+  LV+AL +R +YM
Sbjct: 155 SLDSMPYFHRVSISGGNTSGVPVEELKQAAKLLVEALFIRFKYM 198


>SB_13769| Best HMM Match : DUF1542 (HMM E-Value=1.1)
          Length = 369

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 555 VTLAHFQSLHQVRGRLLKI--LQGYPGSILAADSDTLEVRQDDLVIV 421
           + L  +Q +H+ +GRL     L  Y   +L  D D   V  DD  +V
Sbjct: 89  MALTDWQEIHRCKGRLATYPQLANYNNPVLVEDDDAQVVEDDDAQVV 135


>SB_24802| Best HMM Match : Phage_fiber_C (HMM E-Value=1.1)
          Length = 1072

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 115 RGVQDGSRSPLIITDSFFDDGGSE---SPTSAVGAEAPRELPNELSAPYEVPQF 267
           R   +GS +P   TD    + G+E    P SA G+EA  E+ + L +P E P F
Sbjct: 295 RASDEGSVTP---TDRGTSEQGNELRLDPGSASGSEAMCEVDSALHSPSEAPAF 345


>SB_19993| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -1

Query: 213 LRPHGARRAFTAAIIEERIGDD---QR*SGAVLDTPDGH-YFTKK 91
           +RP GA  A T  ++E+R   +    + +G V  TPDG  YF  K
Sbjct: 7   VRPKGAESAITRQVVEDRFIIEVSITKCTGLVYSTPDGKCYFRHK 51


>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1800

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +1

Query: 91  LFGEIMSIRGVQDGSRSPLIITDSFFDDGGSESPTSAVGAEAPRELPNELSAP 249
           L GE ++ RG     +  L+  +    +G +E+P+ +  A +P  +PN ++ P
Sbjct: 439 LKGEGLAKRGKSAALKELLLFAELMRTNGKTETPSVSATASSPGLVPNGVTGP 491


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,273,217
Number of Sequences: 59808
Number of extensions: 335630
Number of successful extensions: 895
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)