Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1000
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46753-6|AAO21474.1| 740|Caenorhabditis elegans Hypothetical pr... 54 8e-08
U46753-5|ABB88235.1| 803|Caenorhabditis elegans Hypothetical pr... 54 8e-08
U46753-4|AAO21475.1| 764|Caenorhabditis elegans Hypothetical pr... 54 8e-08
U47144-1|AAB52616.2| 448|Caenorhabditis elegans Hypothetical pr... 31 0.83
Z81136-3|CAD27610.1| 196|Caenorhabditis elegans Hypothetical pr... 29 1.9
AF324055-1|AAK01416.1| 151|Caenorhabditis elegans Ly-6-related ... 29 1.9
Z81555-6|CAJ85762.1| 709|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81555-5|CAB04517.2| 694|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z30662-11|CAE17937.1| 358|Caenorhabditis elegans Hypothetical p... 28 5.9
Z30317-8|CAE17925.1| 358|Caenorhabditis elegans Hypothetical pr... 28 5.9
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 28 5.9
>U46753-6|AAO21474.1| 740|Caenorhabditis elegans Hypothetical
protein C34F11.3a protein.
Length = 740
Score = 54.0 bits (124), Expect = 8e-08
Identities = 22/38 (57%), Positives = 33/38 (86%)
Frame = +1
Query: 445 HFQRVAISGEDTSGVPLEDLQQASSYLVQALEMRKRYM 558
++QR+AI+GE+ SGVPLEDL+ AS +L++AL +R +YM
Sbjct: 101 NYQRMAITGEELSGVPLEDLKTASGHLIEALHLRSKYM 138
>U46753-5|ABB88235.1| 803|Caenorhabditis elegans Hypothetical
protein C34F11.3c protein.
Length = 803
Score = 54.0 bits (124), Expect = 8e-08
Identities = 22/38 (57%), Positives = 33/38 (86%)
Frame = +1
Query: 445 HFQRVAISGEDTSGVPLEDLQQASSYLVQALEMRKRYM 558
++QR+AI+GE+ SGVPLEDL+ AS +L++AL +R +YM
Sbjct: 164 NYQRMAITGEELSGVPLEDLKTASGHLIEALHLRSKYM 201
>U46753-4|AAO21475.1| 764|Caenorhabditis elegans Hypothetical
protein C34F11.3b protein.
Length = 764
Score = 54.0 bits (124), Expect = 8e-08
Identities = 22/38 (57%), Positives = 33/38 (86%)
Frame = +1
Query: 445 HFQRVAISGEDTSGVPLEDLQQASSYLVQALEMRKRYM 558
++QR+AI+GE+ SGVPLEDL+ AS +L++AL +R +YM
Sbjct: 125 NYQRMAITGEELSGVPLEDLKTASGHLIEALHLRSKYM 162
>U47144-1|AAB52616.2| 448|Caenorhabditis elegans Hypothetical
protein ZC53.1 protein.
Length = 448
Score = 30.7 bits (66), Expect = 0.83
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 136 RSPLIITDSFFDDGGSESPTSAVGAEAPRELPNELSAPYEVPQ 264
R+ +++TD DDG S+ P + + R+ P E S YE P+
Sbjct: 251 RAEILVTD---DDGTSQQPRGSARGDNKRKSPQEPSMSYEGPK 290
>Z81136-3|CAD27610.1| 196|Caenorhabditis elegans Hypothetical
protein W02B8.5 protein.
Length = 196
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 426 IVIIGDPEPSRLFKHGCRACFAARE-XTHRLSAFRRLNI 313
+V++G P RL+ GC A R H LS F R +I
Sbjct: 102 LVVMGQPTGHRLYMRGCALTIARRGLNNHTLSMFDRYDI 140
>AF324055-1|AAK01416.1| 151|Caenorhabditis elegans Ly-6-related
protein HOT-3 protein.
Length = 151
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 426 IVIIGDPEPSRLFKHGCRACFAARE-XTHRLSAFRRLNI 313
+V++G P RL+ GC A R H LS F R +I
Sbjct: 57 LVVMGQPTGHRLYMRGCALTIARRGLNNHTLSMFDRYDI 95
>Z81555-6|CAJ85762.1| 709|Caenorhabditis elegans Hypothetical
protein F58E10.1b protein.
Length = 709
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +1
Query: 91 LFGEIMSIRGVQDGSRSPLIITDSFFDDGGSE 186
+F ++MS+R + +GS PL+ + +D+ S+
Sbjct: 266 VFNDVMSVRSLAEGSDDPLLDDEFRYDEEDSD 297
>Z81555-5|CAB04517.2| 694|Caenorhabditis elegans Hypothetical
protein F58E10.1a protein.
Length = 694
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +1
Query: 91 LFGEIMSIRGVQDGSRSPLIITDSFFDDGGSE 186
+F ++MS+R + +GS PL+ + +D+ S+
Sbjct: 251 VFNDVMSVRSLAEGSDDPLLDDEFRYDEEDSD 282
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 151 ITDSFFDDGGSESPTSAVGAEAPRELPNEL 240
+T FD+GG + +E+PR +PN +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSI 32
>Z30662-11|CAE17937.1| 358|Caenorhabditis elegans Hypothetical
protein T16G12.9 protein.
Length = 358
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 157 DSFFDDGGSESPTSAVGAEAPRELPNELSAPYEVPQFPIEQIEKKLLIQRQLNVKAAECA 336
+ F + +ES +S+V EA + + E FP+++ ++ IQR +N AEC
Sbjct: 283 EEFKHELNNESSSSSVAEEAMEVAVDYKNEDDE--DFPMDE-DETTQIQRIINYSRAECG 339
Query: 337 QSVR 348
+++R
Sbjct: 340 ENIR 343
>Z30317-8|CAE17925.1| 358|Caenorhabditis elegans Hypothetical
protein T16G12.9 protein.
Length = 358
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 157 DSFFDDGGSESPTSAVGAEAPRELPNELSAPYEVPQFPIEQIEKKLLIQRQLNVKAAECA 336
+ F + +ES +S+V EA + + E FP+++ ++ IQR +N AEC
Sbjct: 283 EEFKHELNNESSSSSVAEEAMEVAVDYKNEDDE--DFPMDE-DETTQIQRIINYSRAECG 339
Query: 337 QSVR 348
+++R
Sbjct: 340 ENIR 343
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 151 ITDSFFDDGGSESPTSAVGAEAPRELPNEL 240
+T FD+GG + +E+PR +PN +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSI 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,427,021
Number of Sequences: 27780
Number of extensions: 237579
Number of successful extensions: 734
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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