Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1000
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 151 ITDSFFDDGGSESPTSAV 204
           I +S  D+GG  SP SAV
Sbjct: 571 IINSSNDEGGKTSPNSAV 588


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/50 (18%), Positives = 23/50 (46%)
 Frame = +1

Query: 163 FFDDGGSESPTSAVGAEAPRELPNELSAPYEVPQFPIEQIEKKLLIQRQL 312
           FF++   +      G   P  +  + +  +  P + ++Q+E+ + +  QL
Sbjct: 257 FFEEKDGQVLWEGFGDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQL 306


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/50 (18%), Positives = 23/50 (46%)
 Frame = +1

Query: 163 FFDDGGSESPTSAVGAEAPRELPNELSAPYEVPQFPIEQIEKKLLIQRQL 312
           FF++   +      G   P  +  + +  +  P + ++Q+E+ + +  QL
Sbjct: 257 FFEEKDGQVLWEGFGDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQL 306


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 185  SLPPSSKNESVMISGDLEPSWTP 117
            S+PP     + + S  L+ SW P
Sbjct: 1112 SIPPEDVRCAALTSQSLQVSWQP 1134


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 185  SLPPSSKNESVMISGDLEPSWTP 117
            S+PP     + + S  L+ SW P
Sbjct: 1108 SIPPEDVRCAALTSQSLQVSWQP 1130


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 318 NIQLPLYE*FLLDLFDWKLR 259
           N  LPLY    L+L D KLR
Sbjct: 377 NAFLPLYNLHTLELSDNKLR 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,094
Number of Sequences: 438
Number of extensions: 2555
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)