Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1000
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /... 33 0.19
At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /... 29 1.8
At1g14200.1 68414.m01680 zinc finger (C3HC4-type RING finger) fa... 29 2.4
At3g12340.2 68416.m01539 immunophilin, putative / FKBP-type pept... 28 4.1
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept... 28 4.1
At1g67710.1 68414.m07727 two-component responsive regulator fami... 28 4.1
At1g51190.1 68414.m05758 ovule development protein, putative sim... 28 4.1
At3g11310.1 68416.m01375 hypothetical protein 28 5.4
At3g11290.1 68416.m01373 expressed protein 28 5.4
At2g19220.1 68415.m02243 hypothetical protein 27 7.2
At4g17600.1 68417.m02632 lil3 protein identical to Lil3 protein ... 27 9.5
At3g63070.1 68416.m07084 PWWP domain-containing protein putative... 27 9.5
At3g23150.1 68416.m02918 ethylene receptor, putative (ETR2) simi... 27 9.5
At3g06770.3 68416.m00803 glycoside hydrolase family 28 protein /... 27 9.5
At3g06770.2 68416.m00804 glycoside hydrolase family 28 protein /... 27 9.5
At3g06770.1 68416.m00802 glycoside hydrolase family 28 protein /... 27 9.5
At2g35000.1 68415.m04294 zinc finger (C3HC4-type RING finger) fa... 27 9.5
>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase PG1 [Glycine max]
GI:5669846; contains PF00295: Glycosyl hydrolases family
28
Length = 444
Score = 32.7 bits (71), Expect = 0.19
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -1
Query: 192 RAFTAAIIEERIGDDQR*SGAVLDTPDGHYFTKKFLITFHCTIHV-RGCQISTFMQT-RA 19
+AF AAI RI +R G +L P G Y T+ F +T H T+++ +G I T
Sbjct: 58 KAFRAAIY--RIQHLKRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKGAVIRAVQDTWNW 115
Query: 18 PVLD 7
P++D
Sbjct: 116 PLID 119
>At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase PG1 [Glycine max]
GI:5669846; contains PF00295: Glycosyl hydrolases family
28
Length = 449
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -1
Query: 192 RAFTAAIIEERIGDDQR*SGAVLDTPDGHYFTKKFLITFHCTIHVR-GCQISTFMQT-RA 19
+AF +AI R ++ G +L P G Y T+ F +T H T+++ G I T +
Sbjct: 62 KAFNSAIDRIRNSNNSN-EGTLLYVPRGVYLTQSFNLTSHMTLYLADGAVIKAVQDTEKW 120
Query: 18 PVLD 7
P+ D
Sbjct: 121 PLTD 124
>At1g14200.1 68414.m01680 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 179
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 97 GEIMSIRGVQDGSRSPLIITDSFFDDGGSESPTSAVGAE 213
G+ +S R V GSRS L D FF DGG + + A+ +E
Sbjct: 54 GDPLSPRFVMIGSRSGL---DDFFSDGGKQGRSPALKSE 89
>At3g12340.2 68416.m01539 immunophilin, putative / FKBP-type
peptidyl-prolyl cis-trans isomerase, putative contains
Pfam profile: PF00254, FKBP-type peptidyl-prolyl
cis-trans isomerases
Length = 186
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 260 GTS*GAESSLGSSRGASAPTALVGLSLPPSSKNESVMISGDLEPSWTPLMDII 102
GT AE + +P+ G+ LPP S E+V +EP ++P + I
Sbjct: 74 GTGKKAEVRKSKKGSSGSPSKGTGIYLPPVSLKEAVSGGLKVEPGFSPFSERI 126
>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
peptidyl-prolyl cis-trans isomerase, putative contains
Pfam profile: PF00254, FKBP-type peptidyl-prolyl
cis-trans isomerases
Length = 694
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 260 GTS*GAESSLGSSRGASAPTALVGLSLPPSSKNESVMISGDLEPSWTPLMDII 102
GT AE + +P+ G+ LPP S E+V +EP ++P + I
Sbjct: 74 GTGKKAEVRKSKKGSSGSPSKGTGIYLPPVSLKEAVSGGLKVEPGFSPFSERI 126
>At1g67710.1 68414.m07727 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver
domain; contains similarity to response regulator
proteins from [Arabidopsis thaliana]
Length = 521
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 142 PLIITDSFFDDGGSESPTSAVGAEAPRELPNELSAPYEVP 261
P++ +SF S +S V AP + E+ PYE P
Sbjct: 360 PVLYENSFLQQQPLPSQSSYVANSAPSLMEEEMKPPYETP 399
>At1g51190.1 68414.m05758 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099) [Arabidopsis thaliana]
Length = 568
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 272 IGNCGTS*GAESSLGSSRGASAPTALVGLSLPPS 171
+GN G G+ S++GSS P V +PPS
Sbjct: 506 LGNNGIGIGSSSTVGSSAEEEFPAVKVDYDMPPS 539
>At3g11310.1 68416.m01375 hypothetical protein
Length = 539
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +2
Query: 494 WRIFNKRPRTWCRLWKCASVTWEMSXXXFSPIT 592
W + R WCRL +C+ + W+ F T
Sbjct: 57 WDTMLRLWRAWCRLVECSEMKWDPQTKKFGAST 89
>At3g11290.1 68416.m01373 expressed protein
Length = 460
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 494 WRIFNKRPRTWCRLWKCASVTWEMSXXXF 580
W K+ + WCRL +C+ + W+ F
Sbjct: 55 WDTMIKQWKIWCRLVQCSDMQWDPQTNTF 83
>At2g19220.1 68415.m02243 hypothetical protein
Length = 439
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 494 WRIFNKRPRTWCRLWKCASVTWE 562
W K+ + WCRL +C + W+
Sbjct: 54 WDTMIKQWKIWCRLVQCKDIKWD 76
>At4g17600.1 68417.m02632 lil3 protein identical to Lil3 protein
[Arabidopsis thaliana] gi|4741966|gb|AAD28780
Length = 262
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 133 SRSPLIITDSFFDDGGSESPTSAVGAEAP 219
+R L+ D GS SPT+AV EAP
Sbjct: 30 NRFSLLSVTRASSDSGSTSPTAAVSVEAP 58
>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
transcription factor HUA2, Arabidopsis thaliana,
EMBL:AF116556
Length = 1347
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = +3
Query: 432 DHLAALPACRYQRRG----YFRGTPGGSSTSVLVPGAGSGNAQALHGRC 566
D L+ +PAC Y RR P +LV GS + LHG C
Sbjct: 983 DSLSNVPACLYSRRSARTERALDDPVRDMEGILVDEYGSNSTLQLHGFC 1031
>At3g23150.1 68416.m02918 ethylene receptor, putative (ETR2) similar
to putative ethylene receptor; ETR2 [Arabidopsis
thaliana] gi|3687654|gb|AAC62208.
Length = 773
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 135 GAVLDTPDGHYFTKKFLITFHCTIHVRGC 49
G +D PDG + T+ + H TIH C
Sbjct: 421 GDSMDVPDGRFGTEMKPFSLHRTIHEAAC 449
>At3g06770.3 68416.m00803 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Persea americana]
GI:166951; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 377
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 135 GAVLDTPDGHYFTKKFLITFHCTI 64
GA L P GH+ T F +T H T+
Sbjct: 8 GAQLYVPPGHWLTGSFSLTSHLTL 31
>At3g06770.2 68416.m00804 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Persea americana]
GI:166951; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 446
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 135 GAVLDTPDGHYFTKKFLITFHCTI 64
GA L P GH+ T F +T H T+
Sbjct: 77 GAQLYVPPGHWLTGSFSLTSHLTL 100
>At3g06770.1 68416.m00802 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Persea americana]
GI:166951; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 377
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 135 GAVLDTPDGHYFTKKFLITFHCTI 64
GA L P GH+ T F +T H T+
Sbjct: 8 GAQLYVPPGHWLTGSFSLTSHLTL 31
>At2g35000.1 68415.m04294 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 435 HLAALPACRYQRRGYFRGTPGGSSTSVLVPGAGSGNAQALH 557
H+A LP R R GY G+ G ++ + N + LH
Sbjct: 293 HVALLPQARSSRSGYRSGSVGSERSAFPYGRKSNNNNRRLH 333
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,829,703
Number of Sequences: 28952
Number of extensions: 225881
Number of successful extensions: 720
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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