Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0998
         (576 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6FWY6 Cluster: Candida glabrata strain CBS138 chromoso...    34   2.1  
UniRef50_UPI0000660AA8 Cluster: Homolog of Brachydanio rerio "CC...    33   3.6  
UniRef50_Q47S29 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  
UniRef50_Q5HDU3 Cluster: Drug transporter, putative; n=17; Staph...    32   8.4  

>UniRef50_Q6FWY6 Cluster: Candida glabrata strain CBS138 chromosome
           C complete sequence; n=1; Candida glabrata|Rep: Candida
           glabrata strain CBS138 chromosome C complete sequence -
           Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 769

 Score = 34.3 bits (75), Expect = 2.1
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 41  PCRLANEALAETRRRLSSACHSCSTITTSRVHHHVSSLLLIFYVSVRSVQVMRTTNNTSM 220
           P  + +   + ++ R  S+  S S +  +R     SSLL   + S  S  V+RTTN T+ 
Sbjct: 254 PDTITSHQQSNSKHRAKSSFQSTSRVKKARPFSSGSSLLFTPFKSTNSPPVVRTTNTTTS 313

Query: 221 ILISFKS 241
             IS  S
Sbjct: 314 AFISTTS 320


>UniRef50_UPI0000660AA8 Cluster: Homolog of Brachydanio rerio
           "CCCTC-binding factor.; n=1; Takifugu rubripes|Rep:
           Homolog of Brachydanio rerio "CCCTC-binding factor. -
           Takifugu rubripes
          Length = 276

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
 Frame = +2

Query: 5   PXPKSTSPARGAPCRLANEALAETRRRLSSACHSCSTITTSR----VHHHVSSLLLIFYV 172
           P P  TSP    P  LA    AE RRR    C  C  +  SR    +H   ++   I   
Sbjct: 63  PPPPGTSPGLSQPSSLAWSRAAERRRRPRLRCFLCPLVLPSRRLLDIHERSAAESKISAK 122

Query: 173 SVRSVQVMRTTNNT 214
            V S +V +    T
Sbjct: 123 QVNSSEVQKVHQQT 136


>UniRef50_Q47S29 Cluster: Putative uncharacterized protein; n=1;
           Thermobifida fusca YX|Rep: Putative uncharacterized
           protein - Thermobifida fusca (strain YX)
          Length = 448

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = +2

Query: 2   PPXPKSTSPARGAPCRLANEALAETRRRLSSACHSCSTITTSRVHH 139
           P  P+   PARG P R A  A A  RRR     H   T+  SR  H
Sbjct: 182 PRHPRPRGPARGPPSRHAGRA-AAPRRRARQLPHGRGTVCRSRHGH 226


>UniRef50_Q5HDU3 Cluster: Drug transporter, putative; n=17;
           Staphylococcus|Rep: Drug transporter, putative -
           Staphylococcus aureus (strain COL)
          Length = 403

 Score = 32.3 bits (70), Expect = 8.4
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 440 NRSSIIFQSIKLIHLINFIQYLCVYLI 520
           N+S I  +S  +  L+NFI YLC+YL+
Sbjct: 8   NKSPIFTKSFTINFLVNFIVYLCMYLL 34


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 427,881,748
Number of Sequences: 1657284
Number of extensions: 7093413
Number of successful extensions: 16567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16563
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)