Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0998
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1009 + 23274632-23274841,23274956-23275084,23275207-23275599     30   1.5  
01_05_0559 + 23281408-23282457,23282580-23282942,23283938-232839...    28   6.1  

>07_03_1009 + 23274632-23274841,23274956-23275084,23275207-23275599
          Length = 243

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +1

Query: 31  PRRTLPTSERGSGGDAAETQLRVSLVLNNNNKPSAPS 141
           PRR  P   RGSG  AA T++  S  +++++KP APS
Sbjct: 184 PRR--PVEARGSGS-AATTRMEKSRRMSSSSKPRAPS 217


>01_05_0559 +
           23281408-23282457,23282580-23282942,23283938-23283991,
           23284088-23284156
          Length = 511

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +2

Query: 2   PPXPKSTSPARGAPCRLANEALAETRRRLSSACHSCSTITTSRVHHHVSSLLLIFYVSVR 181
           PP  +   P   A   +A  A++ T   LSS   + S+I+T+ +    SS      VS  
Sbjct: 349 PPVQEVRPPVASATATIAAAAVSSTAVTLSSTTFTSSSISTTTI-SIASSTFSPAAVSST 407

Query: 182 SVQVMRTTNNTSMI 223
           ++ +  +T +T+ I
Sbjct: 408 TIAIAASTISTASI 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,253,178
Number of Sequences: 37544
Number of extensions: 184323
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)