Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0998
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-10|CAC35900.1|  533|Caenorhabditis elegans Hypothetical...    29   2.4  
Z81132-13|CAB03427.2|  308|Caenorhabditis elegans Hypothetical p...    27   7.2  

>AL161712-10|CAC35900.1|  533|Caenorhabditis elegans Hypothetical
           protein Y66D12A.13 protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +2

Query: 74  TRRRLSSACHSCSTITTSRVHHHVSSLLLIFYVSVRSVQVMRTTNNTSMILISFKSYNLL 253
           T   +    HS   + T           +  Y+  + + V     + SM  +S+ +Y LL
Sbjct: 281 TDTEIEDVVHSAIEVDTKSRAKAKKYSFIHLYIHPK-ITVQTVVASISMFSVSYVTYGLL 339

Query: 254 FNYNIL 271
           FNY++L
Sbjct: 340 FNYDVL 345


>Z81132-13|CAB03427.2|  308|Caenorhabditis elegans Hypothetical
           protein T26E4.14 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 143 VSSLLLIFYVSVRSVQVMRTTNNTSMILISFKSYNLLFNYNIL 271
           + SLL+I      +V V+ TT N  M++++F   NL    NIL
Sbjct: 1   MESLLIILCCIYCTVFVVGTTGNLIMVMVTFYCKNLRSICNIL 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,024,001
Number of Sequences: 27780
Number of extensions: 171285
Number of successful extensions: 431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)