BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0998 (576 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g77280.1 68414.m09000 protein kinase family protein contains ... 28 5.1 At3g05820.1 68416.m00653 beta-fructofuranosidase, putative / inv... 27 6.8 >At1g77280.1 68414.m09000 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain Length = 794 Score = 27.9 bits (59), Expect = 5.1 Identities = 14/65 (21%), Positives = 27/65 (41%) Frame = +2 Query: 83 RLSSACHSCSTITTSRVHHHVSSLLLIFYVSVRSVQVMRTTNNTSMILISFKSYNLLFNY 262 R+ C S + ++ +L F + + + N S++ F+ +NLL Y Sbjct: 458 RVFRGCLSNGRVVAVKILKQTEDVLNDFVAEIEIITTLHHKNIISLLGFCFEDHNLLLVY 517 Query: 263 NILEQ 277 N L + Sbjct: 518 NYLSR 522 >At3g05820.1 68416.m00653 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to neutral invertase [Daucus carota] GI:4200165; contains Pfam profile PF04853: Plant neutral invertase Length = 633 Score = 27.5 bits (58), Expect = 6.8 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +2 Query: 104 SCSTITTSRVHHHVSSLLLIFYVSVRSVQVMRTTNNTSMILISFKSYNL 250 SC +H H + +FY ++RS + M T N++S +I S L Sbjct: 325 SCMIDRRMGIHGHPLEIQALFYSALRSSREMITVNDSSKNIIKTISNRL 373 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,146,403 Number of Sequences: 28952 Number of extensions: 149086 Number of successful extensions: 316 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 311 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 316 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1121903184 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -