Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0997
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   1.4  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    27   1.8  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    27   1.8  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    26   3.2  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   5.6  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   9.7  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   9.7  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   9.7  

>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 144 DMLSTFVLVGESFNGKAVKALQLAIYAPTVLNETSSEYSI 263
           DMLSTF L GES NG    +     + P   ++TSS Y++
Sbjct: 669 DMLSTFKLTGESSNGS--NSTPNEAFQP--FDQTSSLYNV 704


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 289 GVSSNTYNLMLYSELVSLSTVGA*IANCSAFTALPLKLSPTNTNVDNMSVT 137
           G + ++ +L +Y ELV  +  G  I     F  +P++L+P    V ++  T
Sbjct: 386 GQTPHSVSLCVYDELVDSARAGDRIEVTGIFRCVPVRLNPRMRTVKSLFKT 436


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 33  SQXGGQSQWKKIVGLGQETINTPIFTQLDNDKIFLVT 143
           S  G QS+W   +    +T NTP++   +ND  FL++
Sbjct: 90  SLKGIQSKWYGYIEYLPKTFNTPLYFN-ENDNAFLIS 125


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 24  TAVSQXGGQSQWKKIVGLGQETINTPIFTQLDNDKI 131
           T V+    QSQ+  +V +G ET+N P+   LD D++
Sbjct: 190 TYVANKYTQSQYASVV-IGIETVNEPLGYGLDMDQL 224


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -1

Query: 322 FSCS*Q**AAQGVSSNTYNLMLYSELVSLSTVGA*IANCSAFTALPLKLSP--TNTNVDN 149
           F C+ Q  A  G S N  N    S   +  TVG       +FT L +  SP   NT + +
Sbjct: 162 FVCATQDIAVDGWSLNMLNPEQLSYASTAQTVGLNTGFFLSFTILLVFTSPEFANTFIRS 221

Query: 148 MSVTRNILSLSSCVK 104
           +     +++LS  +K
Sbjct: 222 IPSNEGLITLSGYIK 236


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 177  SFNGKAVKALQLAIYAPTVLNETSSEYS 260
            SF+ ++VK+L+  +YA TV  +   EYS
Sbjct: 1263 SFSLRSVKSLKETLYANTVECDCGYEYS 1290


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 268 CTCSKTRLVRLTIVRNKRKNSAECC*ND 351
           C C+ T+   +T +  ++K ++ CC  D
Sbjct: 743 CRCTPTQKANMTRLIQEKKQASVCCIGD 770


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 48  QSQWKKIVGLGQETINTPIFTQLDNDKI 131
           ++Q   ++ + Q  +NT  F+QLDND +
Sbjct: 90  EAQVAYVLLVHQYELNTQYFSQLDNDSV 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,895
Number of Sequences: 5004
Number of extensions: 49938
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)