Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0997
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13... 32 0.26
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692... 31 0.46
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 30 1.1
01_01_0759 + 5855467-5855639,5855753-5855815,5855914-5856057,585... 29 3.2
12_02_0090 + 13493311-13494180 28 4.3
07_03_1193 - 24702135-24702421,24702835-24703160,24703240-247039... 28 5.6
01_07_0085 + 40986662-40986971,40988696-40988918,40989173-40989491 28 5.6
12_02_0753 + 22806544-22806858,22807214-22807609,22807709-228078... 27 9.9
08_01_0767 + 7403930-7404214,7404403-7404783 27 9.9
>06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-133271,
133389-133448,133536-133588,133671-133837,133963-134167,
134989-135046,135225-135281,135363-135608,135938-136002,
136090-136158,136238-136331,136467-136607,137159-137304,
137452-138110,138222-138335,138406-138560
Length = 1163
Score = 32.3 bits (70), Expect = 0.26
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 397 IWSTSVPAGKRSRASVIRRSHSIT---CGARTTTLCIAASLSTGRTTATIL 540
+W+ PA +R A V +HS+T CG R + L +S+ST T ++
Sbjct: 926 LWALGQPAAQRHNAFVRHGAHSLTLDACGRRLSLLQSPSSMSTPGVTGAVV 976
>01_06_0343 + 28566513-28566644,28566791-28568494,28569178-28569240,
28569241-28569310,28570438-28570715,28571886-28571963,
28573017-28573715,28573811-28573913,28574096-28574196,
28574272-28574446,28574843-28575013,28575534-28575634,
28575706-28575771
Length = 1246
Score = 31.5 bits (68), Expect = 0.46
Identities = 29/92 (31%), Positives = 43/92 (46%)
Frame = +3
Query: 135 LVTDMLSTFVLVGESFNGKAVKALQLAIYAPTVLNETSSEYSIRLYVFEDTPCAAYYCQE 314
LVT + +T +G++F+G VK +L A N+ S + D + +
Sbjct: 876 LVTKLSNTLARLGDTFSGY-VKDSRLRSIADGFFNQVSE-------LVPDASLTSSLEEV 927
Query: 315 QEKKLGGVLLERPKTLLFQDGGSHLCLNLEHV 410
EK LG LLE P+T D SHL L L ++
Sbjct: 928 SEKILG--LLELPQTSAISDQISHLSLRLVNI 957
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 492 ERCSSSSTRD*MGSPDNRCPASLSSRD*RAPDSNKDGSLRLGTIK 358
E C++ S + P SL SR R S++DGS+R G+ K
Sbjct: 127 EHCAAKMAEVSRSSEGGKSPMSLFSRHSRRSSSSEDGSVRSGSSK 171
>01_01_0759 +
5855467-5855639,5855753-5855815,5855914-5856057,
5856146-5856920
Length = 384
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 99 PIFTQLDNDKIFLVTDMLSTFVLVGESFNGKAVKALQLAIYAPTVLNETSSEY-SIRLYV 275
P+F + N F+ T + FVL G V + + + +VL S E+ ++ L
Sbjct: 287 PVFLAMSNPLSFVFTIFCALFVLGEVVHLGSVVGGVLMVVGLYSVLWGKSKEHDTLTLAT 346
Query: 276 FEDTPCAAYYCQEQEKKLGGV 338
TP + Q+QEKK+ V
Sbjct: 347 AMPTPASV---QQQEKKVAAV 364
>12_02_0090 + 13493311-13494180
Length = 289
Score = 28.3 bits (60), Expect = 4.3
Identities = 27/124 (21%), Positives = 46/124 (37%)
Frame = +3
Query: 21 TTAVSQXGGQSQWKKIVGLGQETINTPIFTQLDNDKIFLVTDMLSTFVLVGESFNGKAVK 200
TT+ + S K+ L I + I L T ST VL S A
Sbjct: 107 TTSAPKPATASSPTKVPALSVNPILSIIGVPSPTTTSSLATTTTSTAVLFPRSTLSSAST 166
Query: 201 ALQLAIYAPTVLNETSSEYSIRLYVFEDTPCAAYYCQEQEKKLGGVLLERPKTLLFQDGG 380
+P ++S++Y++ + +P CQ GG+ + + + F+ G
Sbjct: 167 PSFTTTSSPVTAPKSSTKYTVATEIVL-SPVFPPSCQTTSPCTGGMPISANRNVAFKKEG 225
Query: 381 SHLC 392
S +C
Sbjct: 226 SSIC 229
>07_03_1193 -
24702135-24702421,24702835-24703160,24703240-24703910,
24704342-24704421,24704515-24704572
Length = 473
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 229 PCSTKPVPNIALDCTCSKTRLVRLTIVRNKRKNSAECC 342
P S+ P P + + C C+ T V T ++ CC
Sbjct: 204 PSSSSPAPPLMMSCLCAVTWNVTCTYSQHLASKYPSCC 241
>01_07_0085 + 40986662-40986971,40988696-40988918,40989173-40989491
Length = 283
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 316 KRKNSAECC*NDRKLYCSKTEAP 384
+R+N A CC D KLY +AP
Sbjct: 237 RRRNVAVCCAKDGKLYTLNAQAP 259
>12_02_0753 +
22806544-22806858,22807214-22807609,22807709-22807840,
22807977-22808354
Length = 406
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +2
Query: 326 TRRSVARTTENFIVPRRRLPSLFESGARQSRLESEAGHRLSGDPIQSRVELELQRSALQL 505
TR + R E P R E R RLE E+G G+ + SR+ ++ R + L
Sbjct: 36 TRATKRRLKEESCDPELRKMRRVEELRRLRRLEEESGDPRLGEDLISRLPDDVLRGIITL 95
Query: 506 HSRPDARLRQY 538
D Q+
Sbjct: 96 LPTKDGTSTQF 106
>08_01_0767 + 7403930-7404214,7404403-7404783
Length = 221
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 171 GESFNGKAVKALQLA--IYAPTVLNETSSEYSIR 266
GESF G VKA Q+A I + TS Y+IR
Sbjct: 83 GESFKGNQVKATQVATIILVTKIQALTSEAYAIR 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,019,501
Number of Sequences: 37544
Number of extensions: 361019
Number of successful extensions: 917
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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