BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0997 (550 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3 SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) 28 5.8 SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8 SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8 SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 28 5.8 SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6) 28 5.8 SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39) 27 7.6 SB_31378| Best HMM Match : Herpes_UL55 (HMM E-Value=4.5) 27 7.6 SB_22837| Best HMM Match : REJ (HMM E-Value=0.057) 27 7.6 >SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 889 Score = 28.7 bits (61), Expect = 3.3 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%) Frame = +2 Query: 41 GRPVSVEE--DRGPRTRNHQHPNLHTARQRQDIP 136 GR V E D G R+H H N H AR + +P Sbjct: 224 GRDVLTERLRDAGELLRDHPHANTHVARAERGLP 257 >SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) Length = 874 Score = 27.9 bits (59), Expect = 5.8 Identities = 14/51 (27%), Positives = 27/51 (52%) Frame = +3 Query: 150 LSTFVLVGESFNGKAVKALQLAIYAPTVLNETSSEYSIRLYVFEDTPCAAY 302 L+TF L+ +SF+ + + + I P + S + S+R++ +E AY Sbjct: 139 LATFELLSQSFHHGVITGMDVCIRKPLIAT-CSLDRSVRIWNYETCSLEAY 188 >SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2671 Score = 27.9 bits (59), Expect = 5.8 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +1 Query: 205 YN*RSTPRPCSTKPVPNIALDCTCSKTRLVRLTIVRNKRKNSAECC*NDRKLYCSK 372 YN RS PR +T P P+ +L+ S V T + ++ + E C + L K Sbjct: 1854 YNARSPPRNVTTPPTPDDSLEGKKSPCAGVENTGTQTGKETAKEICSKKKHLALEK 1909 >SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 224 Score = 27.9 bits (59), Expect = 5.8 Identities = 14/36 (38%), Positives = 24/36 (66%) Frame = -2 Query: 492 ERCSSSSTRD*MGSPDNRCPASLSSRD*RAPDSNKD 385 +R ++ TRD + + DNR P +++RD R P +N+D Sbjct: 84 DRVNNRDTRDPVNNRDNRDP--VNNRDNRDPVNNRD 117 >SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) Length = 761 Score = 27.9 bits (59), Expect = 5.8 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Frame = +2 Query: 308 SGTREKTRRSVARTTENFIVPRRRLPSLFESGARQSRL---ESEAGHRLSGDPIQSRVEL 478 S TR ++R + + I R R L R + S A HR S +SR + Sbjct: 440 SHTRSRSRSHTRSRSRSRIRSRSRSQELDSRTLRSKKSFERRSRASHRESRSRSKSRTKR 499 Query: 479 ELQRSALQLHSRPDARLR 532 E R + SRP +R R Sbjct: 500 ERSRKKSRSRSRPRSRSR 517 >SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6) Length = 1705 Score = 27.9 bits (59), Expect = 5.8 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +1 Query: 205 YN*RSTPRPCSTKPVPNIALDCTCSKTRLVRLTIVRNKRKNSAECC*NDRKLYCSK 372 YN RS PR +T P P+ +L+ S V T + ++ + E C + L K Sbjct: 166 YNARSPPRNVTTPPTPDDSLEGKKSPCAGVENTGTQTGKETAKEICSKKKHLALEK 221 >SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39) Length = 1486 Score = 27.5 bits (58), Expect = 7.6 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -1 Query: 199 FTALPLKLSPTNTNVDNMSVTRNILSLSSCVK 104 + A+ K+SPTN N DN +N+ S S+ ++ Sbjct: 1168 YKAIMGKVSPTNENRDNFDGRQNLKSFSTSLR 1199 >SB_31378| Best HMM Match : Herpes_UL55 (HMM E-Value=4.5) Length = 690 Score = 27.5 bits (58), Expect = 7.6 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 383 PSLFESGARQSRLESEAGHRLSGDPIQSRVELEL 484 PSL +SG RQ+ L SE H+ + P QS + L Sbjct: 235 PSLAQSGIRQTLLRSE-WHQTNPSPAQSSIRQTL 267 >SB_22837| Best HMM Match : REJ (HMM E-Value=0.057) Length = 643 Score = 27.5 bits (58), Expect = 7.6 Identities = 17/57 (29%), Positives = 26/57 (45%) Frame = +3 Query: 30 VSQXGGQSQWKKIVGLGQETINTPIFTQLDNDKIFLVTDMLSTFVLVGESFNGKAVK 200 V+ GGQS ++ + Q NTP + +DK + D +T G + K VK Sbjct: 217 VTDTGGQSATSRVTVVVQPEKNTPPVAKAGSDKDLVYPDDTTTLDAKGSYDDQKIVK 273 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,449,643 Number of Sequences: 59808 Number of extensions: 417894 Number of successful extensions: 1148 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1016 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1147 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1264269032 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -