Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0997
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)                  28   5.8  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             28   5.8  
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)                      28   5.8  
SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)               27   7.6  
SB_31378| Best HMM Match : Herpes_UL55 (HMM E-Value=4.5)               27   7.6  
SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)                     27   7.6  

>SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 889

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +2

Query: 41  GRPVSVEE--DRGPRTRNHQHPNLHTARQRQDIP 136
           GR V  E   D G   R+H H N H AR  + +P
Sbjct: 224 GRDVLTERLRDAGELLRDHPHANTHVARAERGLP 257


>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
          Length = 874

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 150 LSTFVLVGESFNGKAVKALQLAIYAPTVLNETSSEYSIRLYVFEDTPCAAY 302
           L+TF L+ +SF+   +  + + I  P +    S + S+R++ +E     AY
Sbjct: 139 LATFELLSQSFHHGVITGMDVCIRKPLIAT-CSLDRSVRIWNYETCSLEAY 188


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 205  YN*RSTPRPCSTKPVPNIALDCTCSKTRLVRLTIVRNKRKNSAECC*NDRKLYCSK 372
            YN RS PR  +T P P+ +L+   S    V  T  +  ++ + E C   + L   K
Sbjct: 1854 YNARSPPRNVTTPPTPDDSLEGKKSPCAGVENTGTQTGKETAKEICSKKKHLALEK 1909


>SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -2

Query: 492 ERCSSSSTRD*MGSPDNRCPASLSSRD*RAPDSNKD 385
           +R ++  TRD + + DNR P  +++RD R P +N+D
Sbjct: 84  DRVNNRDTRDPVNNRDNRDP--VNNRDNRDPVNNRD 117


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = +2

Query: 308 SGTREKTRRSVARTTENFIVPRRRLPSLFESGARQSRL---ESEAGHRLSGDPIQSRVEL 478
           S TR ++R      + + I  R R   L     R  +     S A HR S    +SR + 
Sbjct: 440 SHTRSRSRSHTRSRSRSRIRSRSRSQELDSRTLRSKKSFERRSRASHRESRSRSKSRTKR 499

Query: 479 ELQRSALQLHSRPDARLR 532
           E  R   +  SRP +R R
Sbjct: 500 ERSRKKSRSRSRPRSRSR 517


>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
          Length = 1705

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 205 YN*RSTPRPCSTKPVPNIALDCTCSKTRLVRLTIVRNKRKNSAECC*NDRKLYCSK 372
           YN RS PR  +T P P+ +L+   S    V  T  +  ++ + E C   + L   K
Sbjct: 166 YNARSPPRNVTTPPTPDDSLEGKKSPCAGVENTGTQTGKETAKEICSKKKHLALEK 221


>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
          Length = 1486

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 199  FTALPLKLSPTNTNVDNMSVTRNILSLSSCVK 104
            + A+  K+SPTN N DN    +N+ S S+ ++
Sbjct: 1168 YKAIMGKVSPTNENRDNFDGRQNLKSFSTSLR 1199


>SB_31378| Best HMM Match : Herpes_UL55 (HMM E-Value=4.5)
          Length = 690

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 383 PSLFESGARQSRLESEAGHRLSGDPIQSRVELEL 484
           PSL +SG RQ+ L SE  H+ +  P QS +   L
Sbjct: 235 PSLAQSGIRQTLLRSE-WHQTNPSPAQSSIRQTL 267


>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
          Length = 643

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 30  VSQXGGQSQWKKIVGLGQETINTPIFTQLDNDKIFLVTDMLSTFVLVGESFNGKAVK 200
           V+  GGQS   ++  + Q   NTP   +  +DK  +  D  +T    G   + K VK
Sbjct: 217 VTDTGGQSATSRVTVVVQPEKNTPPVAKAGSDKDLVYPDDTTTLDAKGSYDDQKIVK 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,449,643
Number of Sequences: 59808
Number of extensions: 417894
Number of successful extensions: 1148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)