Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0997
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated... 54 5e-08
S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. 53 1e-07
S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. 53 1e-07
Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical pr... 28 5.1
U41274-6|AAA82462.1| 601|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF016449-14|AAG23991.1| 517|Caenorhabditis elegans Hypothetical... 27 6.7
Z77657-1|CAB01144.1| 130|Caenorhabditis elegans Hypothetical pr... 27 8.9
U53153-9|AAC69041.1| 511|Caenorhabditis elegans Hypothetical pr... 27 8.9
>AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated
protein 5, isoform a protein.
Length = 919
Score = 54.4 bits (125), Expect = 5e-08
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Frame = +3
Query: 51 SQWKKIVGLGQETINTPIFTQLD-----NDKI---FLVTDMLSTFVLVGESFNG--KAVK 200
S W+K V +G+E +NT +F Q + ND ++T L+ +L G A K
Sbjct: 608 SGWQKAVTIGEENLNTNMFVQFEQPGKKNDGFGWCHVMTYSLARLMLAGHPRRNSLSAAK 667
Query: 201 ALQLAIYAPTVLNETSSEYSIRLYVFEDTPCAAYYCQEQEKKLGGVLLERPKTLLFQDGG 380
+ LA++ PT ++ + +R+Y +T A +QE G LL + + G
Sbjct: 668 RVHLAVFGPTEMSAYRRPFELRVYCVPETGAAMESVWKQED--GSRLLCESNDFILNEKG 725
Query: 381 SHLCLNLEHVSPGWKAKPGIGYQEIPFNHVWSSNYNALHCS 503
+LC+ +E V PG+ G EI N LHCS
Sbjct: 726 -NLCICIEDVIPGFSC-DGPEVVEISETQHRFVAQNGLHCS 764
>S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein.
Length = 919
Score = 53.2 bits (122), Expect = 1e-07
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Frame = +3
Query: 51 SQWKKIVGLGQETINTPIFTQLD-----NDKI---FLVTDMLSTFVLVGESFNG--KAVK 200
S W+K + +G+E +NT +F Q + ND ++T L+ +L G A K
Sbjct: 608 SGWQKALTIGEENLNTNMFVQFEQPGKKNDGFGWCHVMTYSLARLMLAGHPRRNSLSAAK 667
Query: 201 ALQLAIYAPTVLNETSSEYSIRLYVFEDTPCAAYYCQEQEKKLGGVLLERPKTLLFQDGG 380
+ LA++ PT ++ + +R+Y +T A +QE G LL + + G
Sbjct: 668 RVHLAVFGPTEMSAYRRPFELRVYCVPETGAAMESVWKQED--GSRLLCESNDFILNEKG 725
Query: 381 SHLCLNLEHVSPGWKAKPGIGYQEIPFNHVWSSNYNALHCS 503
+LC+ +E V PG+ G EI N LHCS
Sbjct: 726 -NLCICIEDVIPGFSC-DGPEVVEISETQHRFVAQNGLHCS 764
>S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein.
Length = 947
Score = 53.2 bits (122), Expect = 1e-07
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Frame = +3
Query: 51 SQWKKIVGLGQETINTPIFTQLD-----NDKI---FLVTDMLSTFVLVGESFNG--KAVK 200
S W+K + +G+E +NT +F Q + ND ++T L+ +L G A K
Sbjct: 636 SGWQKALTIGEENLNTNMFVQFEQPGKKNDGFGWCHVMTYSLARLMLAGHPRRNSLSAAK 695
Query: 201 ALQLAIYAPTVLNETSSEYSIRLYVFEDTPCAAYYCQEQEKKLGGVLLERPKTLLFQDGG 380
+ LA++ PT ++ + +R+Y +T A +QE G LL + + G
Sbjct: 696 RVHLAVFGPTEMSAYRRPFELRVYCVPETGAAMESVWKQED--GSRLLCESNDFILNEKG 753
Query: 381 SHLCLNLEHVSPGWKAKPGIGYQEIPFNHVWSSNYNALHCS 503
+LC+ +E V PG+ G EI N LHCS
Sbjct: 754 -NLCICIEDVIPGFSC-DGPEVVEISETQHRFVAQNGLHCS 792
>Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical
protein ZK455.7 protein.
Length = 1268
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 484 TTLCIAASLSTGRTTATILIF 546
TTLCIA LST R + IL+F
Sbjct: 565 TTLCIAHRLSTIRNASKILVF 585
>Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical
protein ZK455.7 protein.
Length = 1268
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 484 TTLCIAASLSTGRTTATILIF 546
TTLCIA LST R + IL+F
Sbjct: 565 TTLCIAHRLSTIRNASKILVF 585
>Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical
protein F42E11.1 protein.
Length = 1266
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 484 TTLCIAASLSTGRTTATILIF 546
TTLCIA LST R + IL+F
Sbjct: 563 TTLCIAHRLSTIRNASKILVF 583
>U41274-6|AAA82462.1| 601|Caenorhabditis elegans Hypothetical
protein T04G9.6 protein.
Length = 601
Score = 27.9 bits (59), Expect = 5.1
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +2
Query: 368 PRRRLPSLFESGARQSRLESEAGHRLSGDPIQSRVELELQRSALQLHSRPDARLRQY*F 544
PRR LP+ E +S SE H LS +S +L S L +S ++R Y F
Sbjct: 206 PRRVLPATPEPSTPESVETSEKSHLLS---FESYFQLASMGSELMTYSEEQRQVRNYFF 261
>AF016449-14|AAG23991.1| 517|Caenorhabditis elegans Hypothetical
protein C50H11.1 protein.
Length = 517
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 216 IYAPTVLNETSSEYSIRLYVFEDTPCAAYYCQEQEKKLGGVLLER 350
+ A N+ S E IRL++ P + +E EK+ G V+LER
Sbjct: 278 LLATNNFNKESFE-KIRLFISGSAPLSVPTLEEFEKRTGQVILER 321
>Z77657-1|CAB01144.1| 130|Caenorhabditis elegans Hypothetical
protein F08H9.2 protein.
Length = 130
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 308 SGTREKTRRSVAR-TTENFIVPRRRLPSLFESGARQSRLESEAGHR 442
S +R ++R V+R TT + RRR + S ARQSR S + R
Sbjct: 31 SRSRSRSRSVVSRKTTRTNSLTRRRSSTKAPSSARQSRSRSRSRSR 76
>U53153-9|AAC69041.1| 511|Caenorhabditis elegans Hypothetical
protein T19A5.5 protein.
Length = 511
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 258 SIRLYVFEDTP-CAAYYCQEQEKKLGGVLLERPKTLLFQDGGSHLCLNLEHVSPGWKAK 431
S+ + E TP C + CQ ++L L E KT L+ + C+ E WK +
Sbjct: 242 SVENILSETTPKCVPFQCQTPLQRLAFGLKEIRKTQLWDNIPVINCIGKEETFENWKVQ 300
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,347,978
Number of Sequences: 27780
Number of extensions: 301958
Number of successful extensions: 773
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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