Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0997
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)...    35   0.031
At4g34030.1 68417.m04829 methylcrotonyl-CoA carboxylase beta cha...    32   0.22 
At1g53345.1 68414.m06047 expressed protein                             28   3.6  
At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04...    28   4.7  
At1g18190.1 68414.m02262 expressed protein similar to golgin-84 ...    28   4.7  

>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
           family protein low similarity to Swift [Xenopus laevis]
           GI:14164561; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00533: BRCA1 C
           Terminus (BRCT) domain
          Length = 991

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 383 PSLFESGARQSRLESEAGHRLSGDPIQSRVELELQRSALQLHSRPDARLRQY 538
           PS  +   R+ R  +EA H L  +  Q + + +L+ + L+  +RP++ L+ Y
Sbjct: 398 PSWLKESVREGRFANEASHILHDEDYQLKYDTDLKSTVLRAKARPNSLLKGY 449


>At4g34030.1 68417.m04829 methylcrotonyl-CoA carboxylase beta chain,
           mitochondrial / 3-methylcrotonyl-CoA carboxylase 2
           (MCCB) identical to SP|Q9LDD8 Methylcrotonyl-CoA
           carboxylase beta chain, mitochondrial precursor (EC
           6.4.1.4) (3-Methylcrotonyl-CoA carboxylase 2) (MCCase
           beta subunit) (3-methylcrotonyl-CoA:carbon dioxide
           ligase beta subunit) {Arabidopsis thaliana}; contains
           Pfam profile: PF01039 carboxyl transferase domain
          Length = 587

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +2

Query: 299 LLLSGTREKTRRSVARTTENFIVPRRRLPSLFESGARQSRLESEAGHRLSGDPIQS 466
           +L  G  E  +R+ +R   N ++PR R+  L + G+    L   AGH L  +P+ S
Sbjct: 82  VLAGGGEEAVKRNRSR---NKLLPRERIDRLLDPGSSFLELSQLAGHELYEEPLPS 134


>At1g53345.1 68414.m06047 expressed protein
          Length = 325

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 180 FNGKAVKALQL--AIYAPTVLNETSSEYSIRLYVFEDTPCAAYYCQEQEKKLGGVLLERP 353
           F+ K++ +L     +Y+P  +N+   +    LY+F+ T    +  Q   K    V+L+  
Sbjct: 30  FSAKSIPSLFFPNTVYSPITINQLPLQDISHLYLFDFTGPPGFVHQVSPKVDNVVILDHH 89

Query: 354 KTLLFQDGGSHL-CLNLEHV 410
           KT +   G   L C N+  V
Sbjct: 90  KTAIDSLGDVSLTCKNVTSV 109


>At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 623

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -3

Query: 527 VVRPVESEAAMQSVVVRAPHVIEWDLLITDARLRFPAGTDVLQIQTKMGASVL 369
           ++RPVE E  +  + +++   ++  +L+ D+ +RF    D+L I  K    V+
Sbjct: 194 LLRPVEYEVEVWILALKS--AVKMGILLMDSEMRFDLTRDILHIVWKCSLDVV 244


>At1g18190.1 68414.m02262 expressed protein similar to golgin-84
           {Homo sapiens} (GI:4191344)
          Length = 668

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 341 ARTTENFIVPRRRLPSLFESGARQSRLESEAGHRLSGDPIQSRVELELQRSALQLHS 511
           +R + N  +PR   PS+ +   R+SR  S  G ++  +  QS V   L R    L S
Sbjct: 233 SRRSANETLPRETSPSVGKRDGRESRRSSVWGKQVREEVSQSNVSDGLTRKESSLSS 289


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,598,312
Number of Sequences: 28952
Number of extensions: 280769
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)