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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0996
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             320   6e-88
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)            33   0.20 
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)                    29   3.2  
SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)           29   4.2  
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_49057| Best HMM Match : DUF346 (HMM E-Value=7.2)                    28   7.4  
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)                       28   7.4  
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)               28   7.4  
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)                 28   7.4  
SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)                 27   9.8  
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)                  27   9.8  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  320 bits (786), Expect = 6e-88
 Identities = 152/173 (87%), Positives = 164/173 (94%)
 Frame = +1

Query: 34  VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 213
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 214 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 393
           P+RLFEGNALLRRLVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 65  PRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHAR 124

Query: 394 ILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 552
           +LIRQRHIRVRKQ+VN+PSF+VRLDS KHIDFSL SP+GGGRPGRVKRKN++K
Sbjct: 125 VLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMKK 177


>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 30/123 (24%), Positives = 61/123 (49%)
 Frame = +1

Query: 91  QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 270
           +E+K++ +Y ++ + +  +       I+  A ++  L+ KDP R+     +L +L  +G+
Sbjct: 28  REVKVLRKYHIQKREDYTKYNKLSGLIKSLANKIKDLDPKDPYRVEATEQILEKLHNMGL 87

Query: 271 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 450
           +  K+  L     +    F  RRL   +    +A+ +  A   I Q H+RV  +V+  P+
Sbjct: 88  ISTKK-NLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPEVIMDPA 146

Query: 451 FIV 459
           F+V
Sbjct: 147 FLV 149


>SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)
          Length = 738

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
 Frame = +1

Query: 166 RIRKAARELLTLEEKDPKRLFEGNALLRRLVRI-GVLDEKQMKLDYVLGLKIEDFLERRL 342
           R R+  RE L    +D +R       +RRL +I   L +++++   +L  +I   L +R+
Sbjct: 246 RKRRRQRERLLRRRRDRQRRLRQRRRMRRLRKIIDNLRKREIRRKVILRRRINR-LNKRM 304

Query: 343 QTQVF----KAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 510
           +  +     K G A+  ++ R+ I +R I + ++         RLD   +    LK+   
Sbjct: 305 RIYINRMRRKHGKARRQYNIRVRILRRQITILRKNKTAKRLRQRLDKVMNHVRRLKNRLA 364

Query: 511 GGRPGRVKRKNLRK 552
             R  R++RK L +
Sbjct: 365 RQRRERLRRKRLNR 378


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +1

Query: 61  RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 219
           +RP  K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 57  KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109


>SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)
          Length = 499

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = -1

Query: 325 SPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPSPRG*GAHEQPYGYERACI*R 146
           SP+ +D  H  VSSV    LQ   DD   H L+  ++ PS     +++  +  +     +
Sbjct: 219 SPEVADFFHELVSSVSDISLQLHKDDTT-HMLKDFAFHPSE----SNKTEFITKATERLK 273

Query: 145 AILHACCGDRTLR 107
            ++H+C G + +R
Sbjct: 274 TLVHSCSGKKAIR 286


>SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)
          Length = 398

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +1

Query: 169 IRKAARELLTLEEKDPKRL-------FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDF 327
           + K  R   T  EKDPKR+       + G AL   ++ +G+  E   +  Y LGL +E+ 
Sbjct: 100 VGKWIRTQQTYYEKDPKRVYYLSLEYYMGRALSNTMINLGIQGECD-EAAYQLGLDMEEL 158

Query: 328 LERRLQTQVFKAGLAK 375
            E      +   GL +
Sbjct: 159 EEMEEDAGLGNGGLGR 174


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
 Frame = +1

Query: 121  LRNKREVWRVKYTLARIRKAARELLTLE--EKDPKR--LFEGNA--LLRRLVRIGVL--D 276
            L N  E W  +   AR+R+   +L+ L+  +KD KR  + E  A  L+ R   +     D
Sbjct: 1180 LTNTAEAWTQEQREARLRELKDKLVALDPADKDQKRSVMLEAAAIKLVSRKAHLAKSRED 1239

Query: 277  EKQMKLDYVLGLKIEDF-LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ--VVNIP 447
              ++  D V+   I D   E+  +++   A + +      I +++ HI  R Q  + N+ 
Sbjct: 1240 GSEVPRDEVMISLIADLQQEQDKESEGVLASMQEKDKDGLIALQKEHIAARAQDTLANVR 1299

Query: 448  SFIVRLDSGKHID 486
            + + R + G   D
Sbjct: 1300 AVLTRGEEGVAAD 1312


>SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +1

Query: 175 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKL 294
           ++A ELL   EK+ KRL E NA L    R  V++ +++KL
Sbjct: 24  RSAAELLDKSEKERKRLSEKNAQLTINERDLVMELERLKL 63


>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1155

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +1

Query: 295 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI-PSFIVRLDS 471
           D + G++  D+    L     K  +A        L  QR + V K VV     F+++ + 
Sbjct: 128 DTLRGVQKHDYARLNLDAPALKNPIALPFMRRHQLTPQRIMGVVKTVVQSNEQFVLQGNF 187

Query: 472 GKHIDFSLKSPFGGGRPGRVKRKN 543
             H+      P+GGG+ G+ K+ +
Sbjct: 188 HLHV-VRTHMPYGGGKRGKSKKNS 210


>SB_49057| Best HMM Match : DUF346 (HMM E-Value=7.2)
          Length = 147

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 486 LLSEISIRWRSSWTCQEEEPPQGTGWREPPMMXRKINXTINIY 614
           L  ++S+  RS  T + E P  G G R PP   R +N   NI+
Sbjct: 5   LQPDLSVTGRS--TSRHERPTSG-GRRRPPSAARNVNTKANIF 44


>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
          Length = 259

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 442 CSQLACGHEYAFAGSKFWHDGWTSP 368
           C++LA    Y++ G +FW + W+ P
Sbjct: 72  CARLAEQKNYSYFGVQFWGECWSGP 96


>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
          Length = 454

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 76  KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 219
           K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 2   KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49


>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
          Length = 884

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 253 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 399
           L++I   D+K M+ +Y+LGL +E   +R    +++   + K   H R L
Sbjct: 806 LLQILTQDDKNMEAEYLLGLILERQGKRLEAMKLYMDVIRKDTSHVRAL 854


>SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)
          Length = 600

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 444 DVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLN 316
           D+  + A   MP P   +G+ D + Q +FE +++  T   VL+
Sbjct: 381 DLEKVKAICEMPQPVDIAGVQDLIAQEAFEKIKMMITKAPVLH 423


>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
          Length = 1405

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = +1

Query: 226  FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIR 405
            F G A+  +    G+L   +  LD ++G K ED+ +RRL+ ++ K   A++     ++  
Sbjct: 1139 FRGEAITFKATTAGILATLEHCLD-LMG-KREDYWQRRLEREIEKRKKAEASVKESVVSA 1196

Query: 406  QRH 414
            ++H
Sbjct: 1197 KKH 1199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,328,503
Number of Sequences: 59808
Number of extensions: 392161
Number of successful extensions: 1014
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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