Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0993
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 367 e-102
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 367 e-102
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 366 e-101
05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596... 31 0.83
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 1.1
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 31 1.1
12_02_0759 - 22882435-22882731 30 2.5
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 29 3.3
04_04_0040 + 22322839-22324173 29 4.4
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 4.4
02_02_0657 - 12693609-12694340 29 4.4
12_02_0735 - 22636835-22639502,22639755-22640734 29 5.8
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 5.8
04_04_1303 - 32487174-32487871,32488583-32489123 29 5.8
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 5.8
08_02_1196 - 25190040-25190065,25190224-25190302,25190554-251906... 28 7.7
06_01_0083 - 659510-661267,661577-662384,662700-663646 28 7.7
05_03_0323 - 12424243-12424776 28 7.7
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 7.7
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 367 bits (903), Expect = e-102
Identities = 167/253 (66%), Positives = 202/253 (79%)
Frame = +1
Query: 4 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
LKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR
Sbjct: 25 LKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQR 84
Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363
+ VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+
Sbjct: 85 HVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRS 144
Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543
V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN
Sbjct: 145 VQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRN 204
Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRXNNVFIIGKGTKAYISLPRGKGIRLTI 723
GRVG I SRE+H GSF+ +H++D+ GH FATR NVF IGK K ++SLP+GKGI+L+I
Sbjct: 205 TGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLPKGKGIKLSI 264
Query: 724 XEERDKRIATKVA 762
EE KR A A
Sbjct: 265 IEEARKRNAEAAA 277
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 367 bits (903), Expect = e-102
Identities = 164/253 (64%), Positives = 204/253 (80%)
Frame = +1
Query: 4 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQR 68
Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363
+ VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+
Sbjct: 69 HVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRS 128
Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543
V G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN
Sbjct: 129 VQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRN 188
Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRXNNVFIIGKGTKAYISLPRGKGIRLTI 723
GRVG I +RE+H GSF+ +H++D+ GH FATR NVF IGKG K ++SLP+GKGI+L+I
Sbjct: 189 TGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNKPWVSLPKGKGIKLSI 248
Query: 724 XEERDKRIATKVA 762
EE+ KR A A
Sbjct: 249 IEEQRKRDAAAQA 261
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 366 bits (900), Expect = e-101
Identities = 163/253 (64%), Positives = 204/253 (80%)
Frame = +1
Query: 4 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQR 68
Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363
+ VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+
Sbjct: 69 HVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRS 128
Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543
V G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN
Sbjct: 129 VQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRN 188
Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRXNNVFIIGKGTKAYISLPRGKGIRLTI 723
GRVG I +RE+H GSF+ +H++D+ GH FATR NVF IGKG K ++SLP+GKGI+L+I
Sbjct: 189 TGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSI 248
Query: 724 XEERDKRIATKVA 762
EE+ KR A A
Sbjct: 249 IEEQRKRDAAAQA 261
>05_02_0043 +
5964749-5966406,5966725-5966791,5967174-5967329,
5967782-5967865,5968020-5968073
Length = 672
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 606 HQGLHGTHLRHEXE---QRVHNRQGHEGVHLAAARQGHSPHHRRGAGQAH 746
H G G H+RH + +H E +L +++ GH P+ R A Q H
Sbjct: 325 HHGHTGHHIRHFLQLGWDYLHLTYKQEAANLGSSQNGHFPYRWRRASQYH 374
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 124 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 23
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +3
Query: 570 PRETSRLLRHCAHQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGH-SP-HHRRGAGQA 743
P +RL RH G HG R + E + GH H G SP HH RG GQA
Sbjct: 15 PEAHARLPRHAPPAGGHGRGGRGQ-EGPIAIAAGHGRGHRGGGHGGPASPRHHLRGRGQA 73
Query: 744 HRNQGRRA 767
N A
Sbjct: 74 GPNSADHA 81
>12_02_0759 - 22882435-22882731
Length = 98
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 624 THLRHEXEQRVHNRQGHEGVH-LAAARQGHSPHHRRGAGQAHRNQGRRAXG 773
TH RH +R R+G G L A R P H G G+ R +G G
Sbjct: 42 THERHHLVERGQRRRGDRGAGVLGADRVEEGPQH--GGGERRRGRGGSGGG 90
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 659 MNTLFXLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLR 537
+N +F L V L+CT+ GC + +VP P++R
Sbjct: 213 LNAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>04_04_0040 + 22322839-22324173
Length = 444
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +3
Query: 579 TSRL--LR-HCAHQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRGAG 737
TSRL LR H H HG + RH+ +R R H L A G + AG
Sbjct: 25 TSRLKGLRVHLTHVDAHGNYSRHQLLRRAARRSHHRMSRLVARATGVPMTSSKAAG 80
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 137 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 9
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>02_02_0657 - 12693609-12694340
Length = 243
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +3
Query: 633 RHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRGAGQAHRNQGRRAXGVKG 782
R E + R+G EGV R+G H RG G + N GRR V G
Sbjct: 160 RREAREEAKTREGKEGVPFYRLRRGAG--HGRG-GASTENGGRRPWKVVG 206
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 671 PLPIMNTLFXLVAKVCPVESLMCTMSKEPGCL 576
PL NT+ ++A PVE L C +S + G L
Sbjct: 425 PLVTANTILSILAADYPVEKLACYLSDDGGAL 456
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 21 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 185
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>04_04_1303 - 32487174-32487871,32488583-32489123
Length = 412
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -1
Query: 717 EANALAARQRDVRLRALADYEHVVX--PRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQ 544
EA A A R R A ++ V P GE ++R VL V AG++ G H P
Sbjct: 143 EAWASACRCRGEAPAATPCFDRSVIKWPGGEEIARSVLRVR----AGLACRGTQAFHPPD 198
Query: 543 VTASRDHTQVPR 508
+ R T+ P+
Sbjct: 199 IHRGRAATRTPK 210
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +2
Query: 557 APSCPARDI--PAPSTLCTSRTPRDTPSP 637
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>08_02_1196 -
25190040-25190065,25190224-25190302,25190554-25190646,
25190761-25190892,25191578-25191721,25192941-25193150,
25194915-25195406
Length = 391
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 638 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPD 507
V KV PV+SL C + C+S + + PVI+ + D
Sbjct: 165 VLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYID 208
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 671 PLPIMNTLFXLVAKVCPVESLMCTMSKEPGCL 576
PL NT+ ++A PVE L C +S + G L
Sbjct: 414 PLVTANTILSILAADYPVEKLSCYVSDDGGAL 445
>05_03_0323 - 12424243-12424776
Length = 177
Score = 28.3 bits (60), Expect = 7.7
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -1
Query: 723 DGEANALAARQRDVRLRALADYEHVVXPRGEGVSRGVLDVHNVEGAGMSLAGHD-GAHTP 547
DGEA A QR+ + R H + P G G G N G G + GH GAH
Sbjct: 102 DGEATA--REQREAQQRHNIAAAHAMRPHGRGRGNG----GNGRGRGSAGRGHAIGAHED 155
Query: 546 QVTA 535
V A
Sbjct: 156 DVDA 159
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 274 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 378
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,355,134
Number of Sequences: 37544
Number of extensions: 579157
Number of successful extensions: 2011
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2008
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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