Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0993
         (816 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             416   e-116
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      30   2.0  
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)                 30   2.0  
SB_49989| Best HMM Match : GRP (HMM E-Value=2.3)                       29   3.4  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                29   3.4  
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   6.0  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  416 bits (1024), Expect = e-116
 Identities = 185/251 (73%), Positives = 218/251 (86%)
 Frame = +1

Query: 4    LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
            +KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQR
Sbjct: 433  MKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQR 492

Query: 184  LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363
            LIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+R
Sbjct: 493  LIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRR 552

Query: 364  VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543
            V  G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF++GN+ M+ GGRN
Sbjct: 553  VDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRN 612

Query: 544  LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRXNNVFIIGKGTKAYISLPRGKGIRLTI 723
            +GRVG +  RE+H GSFDIVH+KD+TGH FATR  N+F+IGKG K Y+SLP+GKG+RL+I
Sbjct: 613  MGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKGVRLSI 672

Query: 724  XEERDKRIATK 756
             EERD+RIA K
Sbjct: 673  AEERDRRIAEK 683


>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
 Frame = +3

Query: 477 YEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEXEQRV 656
           Y   G+HQV +     + G P     G H+V  E  R       +G+  T        +V
Sbjct: 148 YTTRGVHQVHI-----ERGSPKYTTRGGHQVHNE--RGSPSTQREGV--TKYTTRGGHQV 198

Query: 657 HNRQG-----HEGVHLAAARQGHSPHHRRGAGQAHR 749
           HN +G      EGV    +R GH  H  RG+   HR
Sbjct: 199 HNERGSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +1

Query: 310 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 489
           I  +TP+    K C+V R++TGP    +++  +G      +  +++    ++ +  + + 
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345

Query: 490 DFIKFESGNLCM 525
            F  FE G  CM
Sbjct: 346 -FPDFEKGVACM 356


>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +3

Query: 552 CGH-HRVPRETSRLLRHCAHQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGHSPHHRR 728
           C H H +  +    + H +H  LH TH+  E  +    R G  G      R+GH  +H+ 
Sbjct: 18  CSHTHTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG------RKGHR-NHKE 70

Query: 729 GAGQAHRNQGRRAXGVK 779
              +  +  G R   V+
Sbjct: 71  PHNRNRKEPGNRIRKVE 87


>SB_49989| Best HMM Match : GRP (HMM E-Value=2.3)
          Length = 181

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +3

Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEXEQRVHNR-QGHEGVHLAAARQGHSPHHRRGA 734
           HHRV  +  +   H    G    H R   + + H+R  G    H   +  G +  H RG+
Sbjct: 53  HHRVSGQAKQ---HHRESGQAKQHHRGSGQAKQHHRGSGQAKQHHRGS--GQAKQHHRGS 107

Query: 735 GQA---HRNQGR 761
           GQA   HR  G+
Sbjct: 108 GQAKQHHRGSGQ 119



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +3

Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEXEQRVHNR-QGHEGVHLAAARQGHSPHHRRGA 734
           HHR   E+ +  +H    G    H R   + + H+R  G    H   +  G +  H RG+
Sbjct: 63  HHR---ESGQAKQHHRGSGQAKQHHRGSGQAKQHHRGSGQAKQHHRGS--GQAKQHHRGS 117

Query: 735 GQA---HRNQGR 761
           GQA   HR  G+
Sbjct: 118 GQAKQHHRGSGQ 129


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +3

Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGHSPHHRR 728
           HH  P     +LRH  H+  +  H RH      H+R  H   H       H P+H R
Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226


>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 645 EQRVHNRQGHEGVHLAAARQGHSPHHRRGAG 737
           +Q  H+  G+   H      GH  HHRR +G
Sbjct: 41  DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +1

Query: 136 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 303
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +3

Query: 123 EES--SEVCFDRKRSPENCE 176
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,287,171
Number of Sequences: 59808
Number of extensions: 630321
Number of successful extensions: 1961
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1953
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)