Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0993
(816 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 354 4e-98
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 42 7e-04
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 31 0.75
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 2.3
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 4.0
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 4.0
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 29 5.3
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 28 7.0
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 28 7.0
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 7.0
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 354 bits (871), Expect = 4e-98
Identities = 167/251 (66%), Positives = 197/251 (78%)
Frame = +1
Query: 4 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
LKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E KI+ QR
Sbjct: 8 LKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQR 67
Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363
+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +KLCKVK
Sbjct: 68 VVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKS 127
Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543
V T K VP L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL +TGGRN
Sbjct: 128 VRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRN 187
Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRXNNVFIIGKGTKAYISLPRGKGIRLTI 723
+GRVG I RER PG+ DI+HIKDS GH+FATR +NVF+IGKG KA +SLP G GIRL+I
Sbjct: 188 VGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSI 247
Query: 724 XEERDKRIATK 756
EERDKR+A K
Sbjct: 248 AEERDKRMAQK 258
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 41.5 bits (93), Expect = 7e-04
Identities = 27/81 (33%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Frame = +3
Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEXEQRVHNRQGHEGV-HLAAARQGHSPHH-RRG 731
HH E H H G HGTH H GH G H A A GH HH G
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHG 584
Query: 732 AGQAH---RNQGRRAXGVKGH 785
H G A GH
Sbjct: 585 VHHGHHESHGHGHHAPAHHGH 605
Score = 40.3 bits (90), Expect = 0.002
Identities = 27/84 (32%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Frame = +3
Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGHSP------- 716
HHR E AH G HGTH H E H+ H G H + HSP
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 717 -HHRRGAGQAHRNQGRRAXGVKGH 785
HH A H + A GH
Sbjct: 460 EHHHAPAHHGHHGEHHHAPAHHGH 483
Score = 39.9 bits (89), Expect = 0.002
Identities = 32/116 (27%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Frame = +3
Query: 414 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRL 590
HH + + H P H ++ ++G H HG A HH E
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHHG-------HHGSHHSPA--HHGHHGEHHHA 512
Query: 591 LRHCAHQGLHGTHLRHEXEQRV----HNRQGHEGVHLAAARQGHSPHHRRGAGQAH 746
H H G HGTH H E H G G H HSP H G+ H
Sbjct: 513 PAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHH 568
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/76 (30%), Positives = 23/76 (30%)
Frame = +3
Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRGAG 737
HH P H G HG H H GH G H HSP H G
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAH-HGHH 689
Query: 738 QAHRNQGRRAXGVKGH 785
AH G GH
Sbjct: 690 GAHHEHGAHHGAHHGH 705
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/67 (31%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Frame = +3
Query: 597 HCAHQGLHGTHLRHEXEQR-VHNRQGHEGVHLAAARQGHSPHHRRGAGQAH---RNQGRR 764
H AH HG H RH E H+ H G H H HH A H G
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH-GTHHGHHGEHHHAPAHHGHHESHGHGHH 450
Query: 765 AXGVKGH 785
+ GH
Sbjct: 451 SPAHHGH 457
Score = 36.7 bits (81), Expect = 0.020
Identities = 29/93 (31%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Frame = +3
Query: 528 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEXEQRVHNRQGHE-GVHLAAA 698
HG G+ G H T L H H G HGTH H H+ HE G H A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAH 702
Query: 699 RQGHSP---HHRRGAGQAH-RNQGRRAXGVKGH 785
H HH G H + Q + K H
Sbjct: 703 HGHHDDKENHHHHGHHSKHSKKQHTKKSHKKSH 735
Score = 35.9 bits (79), Expect = 0.035
Identities = 31/129 (24%), Positives = 42/129 (32%), Gaps = 5/129 (3%)
Frame = +3
Query: 414 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRL 590
HH + + H P H ++ ++G H E + H G G H
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554
Query: 591 LRHCAHQGLHGTHLR---HEXEQRVHNRQG-HEGVHLAAARQGHSPHHRRGAGQAHRNQG 758
AH G HG H H H G H G H + H+P H G+ + G
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614
Query: 759 RRAXGVKGH 785
G H
Sbjct: 615 HHGAGYGAH 623
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/84 (28%), Positives = 26/84 (30%), Gaps = 5/84 (5%)
Frame = +3
Query: 549 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGHSPHHR- 725
A HH E H H G HGTH H GH G H H+P H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEH------HHAPAHHG 517
Query: 726 ----RGAGQAHRNQGRRAXGVKGH 785
G H + A GH
Sbjct: 518 HHGEHGTHHGHHGEHHHAPAHHGH 541
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/69 (30%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Frame = +3
Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEXEQRVHNRQGHEGVHLA-AARQG-HSPHHRRG 731
HH E H H G HG+H H H H H G H HH G
Sbjct: 560 HHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGHHGAG 619
Query: 732 AGQAHRNQG 758
G H + G
Sbjct: 620 YGAHHGHHG 628
Score = 33.1 bits (72), Expect = 0.24
Identities = 30/117 (25%), Positives = 37/117 (31%), Gaps = 6/117 (5%)
Frame = +3
Query: 414 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELV-YDHGRP*LGACGHH--RVPRET 581
HH + + H P H ++ +G H V + HG GHH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614
Query: 582 SRLLRHCAHQGLHGTHLRHEXEQRVHNRQG--HEGVHLAAARQGHSPHHRRGAGQAH 746
+ AH G HG H H H G H G H GH H A H
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSH--GVHHGHHGTHHSLAHHGH 669
Score = 32.7 bits (71), Expect = 0.32
Identities = 25/83 (30%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Frame = +3
Query: 558 HHRVPRETSRLLRHCAHQGLHGTH--LRHEXEQRVHNRQGHEGV-HLAAARQGHSPHHRR 728
H + H H HGTH H E H+ GH G H A A GH H
Sbjct: 390 HEHAAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTHH--GHHGEHHHAPAHHGHHESHGH 447
Query: 729 G----AGQAHRNQGRRAXGVKGH 785
G A H + A GH
Sbjct: 448 GHHSPAHHGHHGEHHHAPAHHGH 470
Score = 31.9 bits (69), Expect = 0.56
Identities = 32/122 (26%), Positives = 38/122 (31%), Gaps = 12/122 (9%)
Frame = +3
Query: 456 HPVRHRNY-EDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRLLRHC------AHQG 614
H V HR++ E +G H +HG HH P H AH G
Sbjct: 399 HGVHHRHHGEHHGTHHSPAHH--GEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHG 456
Query: 615 LHGTH----LRHEXEQRVHNRQGHEGVH-LAAARQGHSPHHRRGAGQAHRNQGRRAXGVK 779
HG H H H+ H G H GH H A H + A
Sbjct: 457 HHGEHHHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHH 516
Query: 780 GH 785
GH
Sbjct: 517 GH 518
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/68 (27%), Positives = 21/68 (30%)
Frame = +3
Query: 555 GHHRVPRETSRLLRHCAHQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRGA 734
GHH H H G HG H H GH G H H+PHH
Sbjct: 588 GHHESHGHGHHAPAHHGHHGEHGVHHGHHG-AGYGAHHGHHGAH-----HHHAPHHEHHE 641
Query: 735 GQAHRNQG 758
+ G
Sbjct: 642 HHGDHHHG 649
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Frame = +3
Query: 597 HCAHQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGH--SPHHRRGAGQAHRNQG 758
HC G HG H R H G G R GH PHH G++ G
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHG 414
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +1
Query: 298 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 429
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 516 LVYDHGRP*LGACGHHRVPRETSRLLRH 599
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 516 LVYDHGRP*LGACGHHRVPRETSRLLRH 599
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 414 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 497
HH PTY F+P H++Y+ + L+
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = +3
Query: 582 SRLLRHCAHQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQG-HSPHHRRGAGQAHRNQG 758
+R RH H+G HG ++H H H R G H P+ H ++
Sbjct: 84 ARRRRHHNHEGHHGNDMKHRENMDRKKHGTHVDHHGRVRRNGDHDPNDPNVDHTGHNHRV 143
Query: 759 RRA 767
+R+
Sbjct: 144 KRS 146
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 654 VHNRQGHEGVHLAAARQGHSPHHRRGAGQAHRN 752
VH+ H+G H R+ H HH G H++
Sbjct: 115 VHDDHHHDGHHKKHGRKEHDHHHGHHHGHHHKH 147
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = +3
Query: 606 HQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRG 731
H G TH H+ + GH G H + + H H G
Sbjct: 43 HHGHMDTHHHHDSHHHGGHHGGHHGGHYESHYESHHHHGHHG 84
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -2
Query: 455 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 291
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,463,705
Number of Sequences: 27780
Number of extensions: 444002
Number of successful extensions: 1471
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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