Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0993
(816 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 28 0.12
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 26 0.48
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 25 0.84
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 24 1.9
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 24 1.9
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 2.6
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 23 3.4
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 22 5.9
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 22 5.9
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 7.8
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 22 7.8
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 27.9 bits (59), Expect = 0.12
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 336 SLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 220
SLL+ +TV C+ A++++ + +++ DNIH IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.8 bits (54), Expect = 0.48
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = +3
Query: 606 HQGLHGT-HLRHEXEQRVHNRQGHEGVHL---AAARQGHSPHH 722
H +H T H H H++ H AA + GH+PHH
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 25.0 bits (52), Expect = 0.84
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 575 RDIPAPSTLCTSRTPRDTPSP 637
RD+P ST T+ RDT +P
Sbjct: 137 RDLPGKSTTTTAEVKRDTINP 157
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.8 bits (49), Expect = 1.9
Identities = 11/44 (25%), Positives = 16/44 (36%)
Frame = +3
Query: 606 HQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRGAG 737
H G G + H H+R G + + R P G+G
Sbjct: 1755 HSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGGSG 1798
Score = 22.2 bits (45), Expect = 5.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 130 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 231
R K+ LTG L K RL+ + P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.8 bits (49), Expect = 1.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 575 RDIPAPSTLCTSRTPRDTPSP 637
RD+P ST T RDT +P
Sbjct: 137 RDLPGKSTTTTVEVKRDTINP 157
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.4 bits (48), Expect = 2.6
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 630 LRHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRGAGQAHRNQGRR 764
++ E QR H+ Q H + A Q H +++ Q R Q R+
Sbjct: 133 IKQETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQ 177
Score = 21.8 bits (44), Expect = 7.8
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = +3
Query: 633 RHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRGAGQ 740
+ + +Q+ H + EGV A + RGA Q
Sbjct: 1226 QQQQQQQQHQAREREGVGAGIAETSAGTSNSRGAAQ 1261
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 23.0 bits (47), Expect = 3.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 378 RSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 259
R G+ + T L+ ++L + CE +NI K ++SL
Sbjct: 75 RYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL 114
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 22.2 bits (45), Expect = 5.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 609 DVHNVEGAGMSLAGHD 562
DVH V GAG + HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 22.2 bits (45), Expect = 5.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 140 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 39
Y R +R T +H ++ +DG+G Y S S
Sbjct: 83 YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.8 bits (44), Expect = 7.8
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +1
Query: 586 GSFDIVHIKDSTGHTFATRXNNVFIIGKGTKAYISLPR 699
G F VH+ T F T + + + + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.8 bits (44), Expect = 7.8
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +1
Query: 586 GSFDIVHIKDSTGHTFATRXNNVFIIGKGTKAYISLPR 699
G F VH+ T F T + + + + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,015
Number of Sequences: 438
Number of extensions: 5321
Number of successful extensions: 22
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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