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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0993
         (816 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   382   e-106
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             382   e-106
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   380   e-106
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse...    34   0.13 
At4g38440.1 68417.m05432 expressed protein                             31   0.91 
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.91 
At1g29760.1 68414.m03639 expressed protein                             31   0.91 
At1g15780.1 68414.m01893 expressed protein                             30   2.1  
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical...    29   3.7  
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ...    29   3.7  
At5g16910.1 68418.m01982 cellulose synthase family protein simil...    29   4.9  
At3g63100.1 68416.m07087 glycine-rich protein                          29   4.9  
At4g08180.3 68417.m01353 oxysterol-binding family protein simila...    28   6.4  
At4g08180.2 68417.m01352 oxysterol-binding family protein simila...    28   6.4  
At4g08180.1 68417.m01351 oxysterol-binding family protein simila...    28   6.4  
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD...    28   6.4  
At1g02730.1 68414.m00226 cellulose synthase family protein simil...    28   6.4  
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote...    28   8.5  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  382 bits (940), Expect = e-106
 Identities = 174/253 (68%), Positives = 210/253 (83%)
 Frame = +1

Query: 4   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
           LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+ I+ QR
Sbjct: 9   LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68

Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363
            I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ 
Sbjct: 69  HIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRS 128

Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543
           +  G K +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF+ GN+ M+TGGRN
Sbjct: 129 IQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRN 188

Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRXNNVFIIGKGTKAYISLPRGKGIRLTI 723
            GRVG I +RE+H GSF+ +HI+DSTGH FATR  NV+ IGKGTK ++SLP+GKGI+LTI
Sbjct: 189 RGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI 248

Query: 724 XEERDKRIATKVA 762
            EE  KR+A++ A
Sbjct: 249 IEEARKRLASQQA 261


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  382 bits (939), Expect = e-106
 Identities = 174/253 (68%), Positives = 210/253 (83%)
 Frame = +1

Query: 4   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
           LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+ I+ QR
Sbjct: 9   LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68

Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363
            I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ 
Sbjct: 69  HIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRS 128

Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543
           +  G K +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF+ GN+ M+TGGRN
Sbjct: 129 IQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRN 188

Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRXNNVFIIGKGTKAYISLPRGKGIRLTI 723
            GRVG I +RE+H GSF+ +HI+DSTGH FATR  NV+ IGKGTK ++SLP+GKGI+LTI
Sbjct: 189 RGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI 248

Query: 724 XEERDKRIATKVA 762
            EE  KR+A++ A
Sbjct: 249 IEEARKRLASQQA 261


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  380 bits (935), Expect = e-106
 Identities = 173/253 (68%), Positives = 209/253 (82%)
 Frame = +1

Query: 4   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
           LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+ I+ QR
Sbjct: 9   LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68

Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363
            I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ 
Sbjct: 69  HIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRS 128

Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543
           +  G K +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF+ GN+ M+TGGRN
Sbjct: 129 IQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRN 188

Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRXNNVFIIGKGTKAYISLPRGKGIRLTI 723
            GRVG I +RE+H GSF+ +HI+DSTGH FATR  NV+ IGKGTK ++SLP+GKGI+LTI
Sbjct: 189 RGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI 248

Query: 724 XEERDKRIATKVA 762
            EE  KR++ + A
Sbjct: 249 IEEARKRLSAQQA 261


>At1g67870.1 68414.m07750 glycine-rich protein contains
           non-consensus GG donor splice site at exon2; modeled to
           est match.
          Length = 279

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +3

Query: 606 HQGLHGTHLRHEXEQRVHNRQGH----EGVHLAAARQGHSPHHRRGAGQAHRN 752
           HQG+HG  ++H+    + ++ GH    +G+H    + GH   H+ G G  H++
Sbjct: 154 HQGMHG--MQHQGGHGMQHQGGHGMQHQGMHGMQHQGGHGMEHQGGHGMQHQD 204



 Score = 31.9 bits (69), Expect = 0.52
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 606 HQGLHGT--HLRHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRGAGQAHR 749
           HQG HG   H  H  + +  +   H+G+H    + GH   H+ G G  H+
Sbjct: 130 HQGGHGIQHHDIHGMQHQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQHQ 179



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = +3

Query: 606 HQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRGAGQAHRNQGRRAXGVKG 782
           HQG HG  ++H   Q +H  Q H+G H    + GH   H+   G  H  QGR     +G
Sbjct: 170 HQGGHG--MQH---QGMHGMQ-HQGGHGMEHQGGHGMQHQDMHGMQH--QGRHGMQHQG 220



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +3

Query: 606 HQGLHGTHL--RHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRGAGQAH 746
           HQ +HG     RH  + +  +   H+G+H    + GH   H+   G  H
Sbjct: 202 HQDMHGMQHQGRHGMQHQGGHEMQHQGMHGMQHQGGHRIQHQGMHGMQH 250


>At4g38440.1 68417.m05432 expressed protein
          Length = 1465

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
 Frame = +1

Query: 7    KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL----VIFLRNRLKYALTGNEVLKIV 174
            +R+  P  W L  +  V++ + STGP +  E L +    V FL      +  G+    +V
Sbjct: 1140 QRMPLPPHWFLSAISAVHSGKTSTGPPESTELLEVAKAGVFFLAGLESSSGFGSLPSPVV 1199

Query: 175  KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRF 306
               L+    K     T     MD++  + T  L+  + ++ G+F
Sbjct: 1200 SVPLV---WKFHALSTVLLVGMDIIEDKNTRNLYNYLQELYGQF 1240


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 104 KHSRNLWGPVDGLGAYTPPSLSNIHAL 24
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


>At1g29760.1 68414.m03639 expressed protein
          Length = 526

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 215 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 123
           S+LTFP   +R CF  F   F    + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225


>At1g15780.1 68414.m01893 expressed protein
          Length = 1335

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 705 LAARQRDVRLRALADYEHVVXPRGEGVSRGVLDVHNVEG 589
           L ARQ+  +L+ + D   +   +G  VSRG+   H+++G
Sbjct: 865 LQARQQAAQLQQMNDMNDLTSRQGMNVSRGMFQQHSMQG 903


>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
           UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
           [Arabidopsis thaliana]; contains Pfam 00415: Regulator
           of chromosome condensation (RCC1)
          Length = 440

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 535 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA-TRXNNVFIIGKGTKAYISL 693
           G NL +   +  + R P    +V +     HT A T  NNVF  G+GT   + +
Sbjct: 311 GNNLDQCSPV--QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362


>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
           putative / steroid 5-alpha-reductase, putative identical
           to gi:1280611; contains a steroid 5-alpha reductase,
           C-terminal domain
          Length = 262

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 194 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 78
           TF R C      + P  A   +FL+    GKH+R  WGP
Sbjct: 8   TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45


>At5g16910.1 68418.m01982 cellulose synthase family protein similar
           to gi:2827143 cellulose synthase catalytic subunit,
           Arabidopsis thaliana, gi:9622886 cellulose synthase-7
           from Zea mays
          Length = 1145

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 671 PLPIMNTLFXLVAKVCPVESLMCTMSKEPGCL 576
           PL   NT+  ++A   PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/70 (32%), Positives = 25/70 (35%)
 Frame = +3

Query: 552 CGHHRVPRETSRLLRHCAHQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRG 731
           CG  R   +  R   HC H   HG    H      H   GH+  H      GH   H  G
Sbjct: 57  CGGRR--HDYGRDCCHCDH--CHGHGYGHG-----HREHGHDRGH------GHGRGHGHG 101

Query: 732 AGQAHRNQGR 761
            G  HR  GR
Sbjct: 102 HGHGHRRHGR 111


>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 127 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 261
           N  ++A+T NE+   +K+RL   D ++R D  Y   G  ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748


>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 127 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 261
           N  ++A+T NE+   +K+RL   D ++R D  Y   G  ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748


>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 814

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 127 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 261
           N  ++A+T NE+   +K+RL   D ++R D  Y   G  ++ + EK
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 749


>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
           similar to cellulose synthase catalytic subunit
           gi:2827143 from [Arabidopsis thaliana], cellulose
           synthase-7 (gi:9622886) from Zea mays; contains Pfam
           profile PF03552: Cellulose synthase
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 671 PLPIMNTLFXLVAKVCPVESLMCTMSKEPGCL 576
           PL   NT+  ++A   PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423


>At1g02730.1 68414.m00226 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit [gi:13925881]
           from Nicotiana alata, cellulose synthase-4 [gi:9622880]
           from Zea mays
          Length = 1181

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 671 PLPIMNTLFXLVAKVCPVESLMCTMSKEPGCL 576
           PL   NT+  ++A   PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447


>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 658

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 403 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 534
           H+  +  +P    ++N+ I+LDI++      I F   NL  +TG
Sbjct: 124 HNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTG 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,564,365
Number of Sequences: 28952
Number of extensions: 419130
Number of successful extensions: 1284
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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