BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0993 (816 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 382 e-106 At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 382 e-106 At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 380 e-106 At1g67870.1 68414.m07750 glycine-rich protein contains non-conse... 34 0.13 At4g38440.1 68417.m05432 expressed protein 31 0.91 At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.91 At1g29760.1 68414.m03639 expressed protein 31 0.91 At1g15780.1 68414.m01893 expressed protein 30 2.1 At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 29 3.7 At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 3.7 At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 4.9 At3g63100.1 68416.m07087 glycine-rich protein 29 4.9 At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 28 6.4 At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 28 6.4 At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 28 6.4 At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 28 6.4 At1g02730.1 68414.m00226 cellulose synthase family protein simil... 28 6.4 At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote... 28 8.5 >At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal protein S4, Arabidopsis thaliana, PIR:T48480 Length = 262 Score = 382 bits (940), Expect = e-106 Identities = 174/253 (68%), Positives = 210/253 (83%) Frame = +1 Query: 4 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183 LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68 Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363 I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ Sbjct: 69 HIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRS 128 Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543 + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ M+TGGRN Sbjct: 129 IQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRN 188 Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRXNNVFIIGKGTKAYISLPRGKGIRLTI 723 GRVG I +RE+H GSF+ +HI+DSTGH FATR NV+ IGKGTK ++SLP+GKGI+LTI Sbjct: 189 RGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI 248 Query: 724 XEERDKRIATKVA 762 EE KR+A++ A Sbjct: 249 IEEARKRLASQQA 261 >At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) Length = 262 Score = 382 bits (939), Expect = e-106 Identities = 174/253 (68%), Positives = 210/253 (83%) Frame = +1 Query: 4 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183 LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68 Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363 I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ Sbjct: 69 HIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRS 128 Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543 + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ M+TGGRN Sbjct: 129 IQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRN 188 Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRXNNVFIIGKGTKAYISLPRGKGIRLTI 723 GRVG I +RE+H GSF+ +HI+DSTGH FATR NV+ IGKGTK ++SLP+GKGI+LTI Sbjct: 189 RGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI 248 Query: 724 XEERDKRIATKVA 762 EE KR+A++ A Sbjct: 249 IEEARKRLASQQA 261 >At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains ribosomal protein S4 signature from residues 8 to 22 Length = 261 Score = 380 bits (935), Expect = e-106 Identities = 173/253 (68%), Positives = 209/253 (82%) Frame = +1 Query: 4 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183 LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68 Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363 I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ Sbjct: 69 HIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRS 128 Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543 + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ M+TGGRN Sbjct: 129 IQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRN 188 Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRXNNVFIIGKGTKAYISLPRGKGIRLTI 723 GRVG I +RE+H GSF+ +HI+DSTGH FATR NV+ IGKGTK ++SLP+GKGI+LTI Sbjct: 189 RGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTI 248 Query: 724 XEERDKRIATKVA 762 EE KR++ + A Sbjct: 249 IEEARKRLSAQQA 261 >At1g67870.1 68414.m07750 glycine-rich protein contains non-consensus GG donor splice site at exon2; modeled to est match. Length = 279 Score = 33.9 bits (74), Expect = 0.13 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%) Frame = +3 Query: 606 HQGLHGTHLRHEXEQRVHNRQGH----EGVHLAAARQGHSPHHRRGAGQAHRN 752 HQG+HG ++H+ + ++ GH +G+H + GH H+ G G H++ Sbjct: 154 HQGMHG--MQHQGGHGMQHQGGHGMQHQGMHGMQHQGGHGMEHQGGHGMQHQD 204 Score = 31.9 bits (69), Expect = 0.52 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Frame = +3 Query: 606 HQGLHGT--HLRHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRGAGQAHR 749 HQG HG H H + + + H+G+H + GH H+ G G H+ Sbjct: 130 HQGGHGIQHHDIHGMQHQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQHQ 179 Score = 28.3 bits (60), Expect = 6.4 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = +3 Query: 606 HQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRGAGQAHRNQGRRAXGVKG 782 HQG HG ++H Q +H Q H+G H + GH H+ G H QGR +G Sbjct: 170 HQGGHG--MQH---QGMHGMQ-HQGGHGMEHQGGHGMQHQDMHGMQH--QGRHGMQHQG 220 Score = 27.9 bits (59), Expect = 8.5 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = +3 Query: 606 HQGLHGTHL--RHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRGAGQAH 746 HQ +HG RH + + + H+G+H + GH H+ G H Sbjct: 202 HQDMHGMQHQGRHGMQHQGGHEMQHQGMHGMQHQGGHRIQHQGMHGMQH 250 >At4g38440.1 68417.m05432 expressed protein Length = 1465 Score = 31.1 bits (67), Expect = 0.91 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 4/104 (3%) Frame = +1 Query: 7 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL----VIFLRNRLKYALTGNEVLKIV 174 +R+ P W L + V++ + STGP + E L + V FL + G+ +V Sbjct: 1140 QRMPLPPHWFLSAISAVHSGKTSTGPPESTELLEVAKAGVFFLAGLESSSGFGSLPSPVV 1199 Query: 175 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRF 306 L+ K T MD++ + T L+ + ++ G+F Sbjct: 1200 SVPLV---WKFHALSTVLLVGMDIIEDKNTRNLYNYLQELYGQF 1240 >At4g10710.1 68417.m01751 transcriptional regulator-related similar to chromatin-specific transcription elongation factor FACT 140 kDa subunit (GI:5499741) [Homo sapiens] Length = 1074 Score = 31.1 bits (67), Expect = 0.91 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -2 Query: 104 KHSRNLWGPVDGLGAYTPPSLSNIHAL 24 KHS +LWG D L TPP+ ++ L Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70 >At1g29760.1 68414.m03639 expressed protein Length = 526 Score = 31.1 bits (67), Expect = 0.91 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -2 Query: 215 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 123 S+LTFP +R CF F F + RRFL Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225 >At1g15780.1 68414.m01893 expressed protein Length = 1335 Score = 29.9 bits (64), Expect = 2.1 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -1 Query: 705 LAARQRDVRLRALADYEHVVXPRGEGVSRGVLDVHNVEG 589 L ARQ+ +L+ + D + +G VSRG+ H+++G Sbjct: 865 LQARQQAAQLQQMNDMNDLTSRQGMNVSRGMFQQHSMQG 903 >At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1) [Arabidopsis thaliana]; contains Pfam 00415: Regulator of chromosome condensation (RCC1) Length = 440 Score = 29.1 bits (62), Expect = 3.7 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = +1 Query: 535 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA-TRXNNVFIIGKGTKAYISL 693 G NL + + + R P +V + HT A T NNVF G+GT + + Sbjct: 311 GNNLDQCSPV--QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362 >At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, putative / steroid 5-alpha-reductase, putative identical to gi:1280611; contains a steroid 5-alpha reductase, C-terminal domain Length = 262 Score = 29.1 bits (62), Expect = 3.7 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -2 Query: 194 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 78 TF R C + P A +FL+ GKH+R WGP Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45 >At5g16910.1 68418.m01982 cellulose synthase family protein similar to gi:2827143 cellulose synthase catalytic subunit, Arabidopsis thaliana, gi:9622886 cellulose synthase-7 from Zea mays Length = 1145 Score = 28.7 bits (61), Expect = 4.9 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -2 Query: 671 PLPIMNTLFXLVAKVCPVESLMCTMSKEPGCL 576 PL NT+ ++A PVE L C +S + G L Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426 >At3g63100.1 68416.m07087 glycine-rich protein Length = 199 Score = 28.7 bits (61), Expect = 4.9 Identities = 23/70 (32%), Positives = 25/70 (35%) Frame = +3 Query: 552 CGHHRVPRETSRLLRHCAHQGLHGTHLRHEXEQRVHNRQGHEGVHLAAARQGHSPHHRRG 731 CG R + R HC H HG H H GH+ H GH H G Sbjct: 57 CGGRR--HDYGRDCCHCDH--CHGHGYGHG-----HREHGHDRGH------GHGRGHGHG 101 Query: 732 AGQAHRNQGR 761 G HR GR Sbjct: 102 HGHGHRRHGR 111 >At4g08180.3 68417.m01353 oxysterol-binding family protein similar to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens}; contains Pfam profiles PF00169: PH domain, PF01237: Oxysterol-binding protein Length = 813 Score = 28.3 bits (60), Expect = 6.4 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 127 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 261 N ++A+T NE+ +K+RL D ++R D Y G ++ + EK Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748 >At4g08180.2 68417.m01352 oxysterol-binding family protein similar to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens}; contains Pfam profiles PF00169: PH domain, PF01237: Oxysterol-binding protein Length = 813 Score = 28.3 bits (60), Expect = 6.4 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 127 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 261 N ++A+T NE+ +K+RL D ++R D Y G ++ + EK Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748 >At4g08180.1 68417.m01351 oxysterol-binding family protein similar to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens}; contains Pfam profiles PF00169: PH domain, PF01237: Oxysterol-binding protein Length = 814 Score = 28.3 bits (60), Expect = 6.4 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 127 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 261 N ++A+T NE+ +K+RL D ++R D Y G ++ + EK Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 749 >At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3) similar to cellulose synthase catalytic subunit gi:2827143 from [Arabidopsis thaliana], cellulose synthase-7 (gi:9622886) from Zea mays; contains Pfam profile PF03552: Cellulose synthase Length = 1145 Score = 28.3 bits (60), Expect = 6.4 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -2 Query: 671 PLPIMNTLFXLVAKVCPVESLMCTMSKEPGCL 576 PL NT+ ++A PVE L C +S + G L Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423 >At1g02730.1 68414.m00226 cellulose synthase family protein similar to cellulose synthase catalytic subunit [gi:13925881] from Nicotiana alata, cellulose synthase-4 [gi:9622880] from Zea mays Length = 1181 Score = 28.3 bits (60), Expect = 6.4 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -2 Query: 671 PLPIMNTLFXLVAKVCPVESLMCTMSKEPGCL 576 PL NT+ ++A PVE L C +S + G L Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447 >At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein kinase, putative Length = 658 Score = 27.9 bits (59), Expect = 8.5 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +1 Query: 403 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 534 H+ + +P ++N+ I+LDI++ I F NL +TG Sbjct: 124 HNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTG 167 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,564,365 Number of Sequences: 28952 Number of extensions: 419130 Number of successful extensions: 1284 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1206 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1282 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1863090400 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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