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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0992
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.03 |||signal recognition particle receptor alpha subunit...   172   4e-44
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    55   1e-08
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    33   0.043
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    28   1.2  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    28   1.2  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    27   2.9  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   5.0  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    26   6.6  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    26   6.6  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   8.7  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   8.7  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   8.7  

>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score =  172 bits (419), Expect = 4e-44
 Identities = 85/205 (41%), Positives = 124/205 (60%), Gaps = 1/205 (0%)
 Frame = +1

Query: 4   PVLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSP 183
           P+L ++++HL  KNVA  IA +LC+SV   L  K +G+FD+V  TV     + L +IL+P
Sbjct: 263 PILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKAFRDRLTQILTP 322

Query: 184 KRRVDILRDCLHA-KQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFR 360
              +D+L       K E RPY ++  GVNGVGKST LAKI +WL+ N+  +L+AACDTFR
Sbjct: 323 STSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFR 382

Query: 361 AGAVEQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVL 540
           +GA+EQL  H +                + L+ +GYGKD++ +   A+ YA     DV+L
Sbjct: 383 SGAIEQLGVHVK-------NLQSLKGSSIELFAQGYGKDSSFVVKNAVEYAKQNSFDVIL 435

Query: 541 IDTAGRMQDNEPLMRALAKLIRGQR 615
           IDTAGR  +++ LM +L K  +  +
Sbjct: 436 IDTAGRRHNDQRLMGSLEKFTKATK 460


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 45/190 (23%), Positives = 82/190 (43%)
 Frame = +1

Query: 31  LIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPKRRVDILRD 210
           L+  +V   +  +L  ++  K+    L    +  + V+  + + L  ++ PK  VD    
Sbjct: 39  LLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFDELCSLVDPK--VDAF-- 94

Query: 211 CLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTH 390
                ++GRP V+   G+ G GK+T  +K+        L   + A DTFRAGA +QL+ +
Sbjct: 95  ---TPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQN 151

Query: 391 TRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDN 570
                             V  +      D   IA E +    + + DV+++DT+GR Q  
Sbjct: 152 A-------------IKARVPYFGSYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQE 198

Query: 571 EPLMRALAKL 600
           + L   + ++
Sbjct: 199 QELFAEMVEI 208


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 223 KQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQL 381
           K EGRP+++   G  G GKST  + +   L   + SV+  + D F     EQ+
Sbjct: 20  KPEGRPFILGISGPQGSGKSTLASALDTELTRKNESVVKFSLDDFYLTHAEQV 72


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 238 PYVMAFCGVNGVGKSTNLAKICFWL 312
           PY+    G NG GKST ++ IC  L
Sbjct: 33  PYLNLIIGPNGTGKSTIVSAICIGL 57


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1026

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -1

Query: 573  LVVLHSARSVDE-HDVGFSVRRVSYCFHCYAGRVFAVSLLVERDHVSCVVARGR 415
            L +L+S+RSV+E HDV  ++    + F C+  +V   S + + D V   +A+ R
Sbjct: 878  LPILYSSRSVEEVHDVTNAI-ATQFPFACFDSKVEKYSYIDDGDLVVYEIAKRR 930


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 375 LHGAGAERVARRYQHRQIVLDQPEADLRQVRRFTDAVHPAERHDVG 238
           L+G    R  R+  H  I+ D P+   R+ +   D   P E   VG
Sbjct: 344 LYGKAESRKGRKMGHVTIISDSPQECERRYQMLLDVKDPVESPVVG 389


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 250 AFCGVNGVGKSTNLAKICFWLIENDLSVLIA 342
           A  G+NG GKS  L  ICF L   ++S + A
Sbjct: 29  AITGLNGSGKSNILDAICFVLGITNMSTVRA 59


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +1

Query: 7   VLDKLRDHLIGKNV-----AADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTE 159
           V+ K  DH     V      AD+  K  D   IK++GKV G+ D   K VK  + +
Sbjct: 179 VVSKAHDHFANIAVDAVLSVADLQRKDVDFELIKVDGKVGGSVDD-TKLVKGVVVD 233


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 150 PHRVPRADTVAEASRGHPAGLSARQAGGQAL 242
           PHRV R  +++  +R HP  ++ R    Q L
Sbjct: 235 PHRVGRIASISGGARSHPYSIALRFTQRQIL 265


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 214 LHAKQEGRP-YVMAFCGVNGVGKSTNL 291
           LH     RP  V+   G NG+GKST L
Sbjct: 94  LHRLPTPRPGQVLGLVGTNGIGKSTAL 120


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
 Frame = +1

Query: 31  LIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAK-TVKATLTESLVRILSPKRRVDILR 207
           L+G+ +A+ I++K+ D +      K L + D ++  T++     +    L+   R+ +  
Sbjct: 405 LVGEELASQISSKIYDDLHAFY--KSLNSVDGISNLTIEEEELVNTDFSLAYGGRLLLSH 462

Query: 208 DCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIEN 321
             LH  +  R  V+   G NG GKST L  I  + +EN
Sbjct: 463 TNLHLYRGHRYGVV---GHNGCGKSTLLRAIGDYKVEN 497


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 368 PWSSCARTRGTSTRCTRPRATTHDTWSRSTRRDTA 472
           P ++ ART  T+ R T    T++ + S STR  T+
Sbjct: 153 PTTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTS 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,678
Number of Sequences: 5004
Number of extensions: 50664
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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