BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0992 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 172 4e-44 SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 55 1e-08 SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 33 0.043 SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 28 1.2 SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 28 1.2 SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 27 2.9 SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 5.0 SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 6.6 SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 26 6.6 SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 8.7 SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 8.7 SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 8.7 >SPBC3B9.03 |||signal recognition particle receptor alpha subunit Srp101|Schizosaccharomyces pombe|chr 2|||Manual Length = 547 Score = 172 bits (419), Expect = 4e-44 Identities = 85/205 (41%), Positives = 124/205 (60%), Gaps = 1/205 (0%) Frame = +1 Query: 4 PVLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSP 183 P+L ++++HL KNVA IA +LC+SV L K +G+FD+V TV + L +IL+P Sbjct: 263 PILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKAFRDRLTQILTP 322 Query: 184 KRRVDILRDCLHA-KQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFR 360 +D+L K E RPY ++ GVNGVGKST LAKI +WL+ N+ +L+AACDTFR Sbjct: 323 STSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFR 382 Query: 361 AGAVEQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVL 540 +GA+EQL H + + L+ +GYGKD++ + A+ YA DV+L Sbjct: 383 SGAIEQLGVHVK-------NLQSLKGSSIELFAQGYGKDSSFVVKNAVEYAKQNSFDVIL 435 Query: 541 IDTAGRMQDNEPLMRALAKLIRGQR 615 IDTAGR +++ LM +L K + + Sbjct: 436 IDTAGRRHNDQRLMGSLEKFTKATK 460 >SPCC188.06c |srp54||signal recognition particle subunit Srp54|Schizosaccharomyces pombe|chr 3|||Manual Length = 522 Score = 54.8 bits (126), Expect = 1e-08 Identities = 45/190 (23%), Positives = 82/190 (43%) Frame = +1 Query: 31 LIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPKRRVDILRD 210 L+ +V + +L ++ K+ L + + V+ + + L ++ PK VD Sbjct: 39 LLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFDELCSLVDPK--VDAF-- 94 Query: 211 CLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTH 390 ++GRP V+ G+ G GK+T +K+ L + A DTFRAGA +QL+ + Sbjct: 95 ---TPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQN 151 Query: 391 TRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDN 570 V + D IA E + + + DV+++DT+GR Q Sbjct: 152 A-------------IKARVPYFGSYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQE 198 Query: 571 EPLMRALAKL 600 + L + ++ Sbjct: 199 QELFAEMVEI 208 >SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 277 Score = 33.1 bits (72), Expect = 0.043 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = +1 Query: 223 KQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQL 381 K EGRP+++ G G GKST + + L + SV+ + D F EQ+ Sbjct: 20 KPEGRPFILGISGPQGSGKSTLASALDTELTRKNESVVKFSLDDFYLTHAEQV 72 >SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1065 Score = 28.3 bits (60), Expect = 1.2 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +1 Query: 238 PYVMAFCGVNGVGKSTNLAKICFWL 312 PY+ G NG GKST ++ IC L Sbjct: 33 PYLNLIIGPNGTGKSTIVSAICIGL 57 >SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 1026 Score = 28.3 bits (60), Expect = 1.2 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = -1 Query: 573 LVVLHSARSVDE-HDVGFSVRRVSYCFHCYAGRVFAVSLLVERDHVSCVVARGR 415 L +L+S+RSV+E HDV ++ + F C+ +V S + + D V +A+ R Sbjct: 878 LPILYSSRSVEEVHDVTNAI-ATQFPFACFDSKVEKYSYIDDGDLVVYEIAKRR 930 >SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase Ade6|Schizosaccharomyces pombe|chr 3|||Manual Length = 552 Score = 27.1 bits (57), Expect = 2.9 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = -1 Query: 375 LHGAGAERVARRYQHRQIVLDQPEADLRQVRRFTDAVHPAERHDVG 238 L+G R R+ H I+ D P+ R+ + D P E VG Sbjct: 344 LYGKAESRKGRKMGHVTIISDSPQECERRYQMLLDVKDPVESPVVG 389 >SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosaccharomyces pombe|chr 2|||Manual Length = 1172 Score = 26.2 bits (55), Expect = 5.0 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +1 Query: 250 AFCGVNGVGKSTNLAKICFWLIENDLSVLIA 342 A G+NG GKS L ICF L ++S + A Sbjct: 29 AITGLNGSGKSNILDAICFVLGITNMSTVRA 59 >SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit Cct5|Schizosaccharomyces pombe|chr 1|||Manual Length = 546 Score = 25.8 bits (54), Expect = 6.6 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Frame = +1 Query: 7 VLDKLRDHLIGKNV-----AADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTE 159 V+ K DH V AD+ K D IK++GKV G+ D K VK + + Sbjct: 179 VVSKAHDHFANIAVDAVLSVADLQRKDVDFELIKVDGKVGGSVDD-TKLVKGVVVD 233 >SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 504 Score = 25.8 bits (54), Expect = 6.6 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +3 Query: 150 PHRVPRADTVAEASRGHPAGLSARQAGGQAL 242 PHRV R +++ +R HP ++ R Q L Sbjct: 235 PHRVGRIASISGGARSHPYSIALRFTQRQIL 265 >SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 593 Score = 25.4 bits (53), Expect = 8.7 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +1 Query: 214 LHAKQEGRP-YVMAFCGVNGVGKSTNL 291 LH RP V+ G NG+GKST L Sbjct: 94 LHRLPTPRPGQVLGLVGTNGIGKSTAL 120 >SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1057 Score = 25.4 bits (53), Expect = 8.7 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Frame = +1 Query: 31 LIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAK-TVKATLTESLVRILSPKRRVDILR 207 L+G+ +A+ I++K+ D + K L + D ++ T++ + L+ R+ + Sbjct: 405 LVGEELASQISSKIYDDLHAFY--KSLNSVDGISNLTIEEEELVNTDFSLAYGGRLLLSH 462 Query: 208 DCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIEN 321 LH + R V+ G NG GKST L I + +EN Sbjct: 463 TNLHLYRGHRYGVV---GHNGCGKSTLLRAIGDYKVEN 497 >SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 2|||Manual Length = 786 Score = 25.4 bits (53), Expect = 8.7 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +2 Query: 368 PWSSCARTRGTSTRCTRPRATTHDTWSRSTRRDTA 472 P ++ ART T+ R T T++ + S STR T+ Sbjct: 153 PTTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTS 187 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,666,678 Number of Sequences: 5004 Number of extensions: 50664 Number of successful extensions: 181 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 172 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 179 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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