Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0992
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 172 4e-44
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 55 1e-08
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 33 0.043
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 28 1.2
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 28 1.2
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 27 2.9
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 5.0
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 6.6
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 26 6.6
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 8.7
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 8.7
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 8.7
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 172 bits (419), Expect = 4e-44
Identities = 85/205 (41%), Positives = 124/205 (60%), Gaps = 1/205 (0%)
Frame = +1
Query: 4 PVLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSP 183
P+L ++++HL KNVA IA +LC+SV L K +G+FD+V TV + L +IL+P
Sbjct: 263 PILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKAFRDRLTQILTP 322
Query: 184 KRRVDILRDCLHA-KQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFR 360
+D+L K E RPY ++ GVNGVGKST LAKI +WL+ N+ +L+AACDTFR
Sbjct: 323 STSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFR 382
Query: 361 AGAVEQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVL 540
+GA+EQL H + + L+ +GYGKD++ + A+ YA DV+L
Sbjct: 383 SGAIEQLGVHVK-------NLQSLKGSSIELFAQGYGKDSSFVVKNAVEYAKQNSFDVIL 435
Query: 541 IDTAGRMQDNEPLMRALAKLIRGQR 615
IDTAGR +++ LM +L K + +
Sbjct: 436 IDTAGRRHNDQRLMGSLEKFTKATK 460
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 54.8 bits (126), Expect = 1e-08
Identities = 45/190 (23%), Positives = 82/190 (43%)
Frame = +1
Query: 31 LIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPKRRVDILRD 210
L+ +V + +L ++ K+ L + + V+ + + L ++ PK VD
Sbjct: 39 LLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFDELCSLVDPK--VDAF-- 94
Query: 211 CLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTH 390
++GRP V+ G+ G GK+T +K+ L + A DTFRAGA +QL+ +
Sbjct: 95 ---TPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQN 151
Query: 391 TRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDN 570
V + D IA E + + + DV+++DT+GR Q
Sbjct: 152 A-------------IKARVPYFGSYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQE 198
Query: 571 EPLMRALAKL 600
+ L + ++
Sbjct: 199 QELFAEMVEI 208
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 33.1 bits (72), Expect = 0.043
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 223 KQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQL 381
K EGRP+++ G G GKST + + L + SV+ + D F EQ+
Sbjct: 20 KPEGRPFILGISGPQGSGKSTLASALDTELTRKNESVVKFSLDDFYLTHAEQV 72
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 238 PYVMAFCGVNGVGKSTNLAKICFWL 312
PY+ G NG GKST ++ IC L
Sbjct: 33 PYLNLIIGPNGTGKSTIVSAICIGL 57
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -1
Query: 573 LVVLHSARSVDE-HDVGFSVRRVSYCFHCYAGRVFAVSLLVERDHVSCVVARGR 415
L +L+S+RSV+E HDV ++ + F C+ +V S + + D V +A+ R
Sbjct: 878 LPILYSSRSVEEVHDVTNAI-ATQFPFACFDSKVEKYSYIDDGDLVVYEIAKRR 930
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -1
Query: 375 LHGAGAERVARRYQHRQIVLDQPEADLRQVRRFTDAVHPAERHDVG 238
L+G R R+ H I+ D P+ R+ + D P E VG
Sbjct: 344 LYGKAESRKGRKMGHVTIISDSPQECERRYQMLLDVKDPVESPVVG 389
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 250 AFCGVNGVGKSTNLAKICFWLIENDLSVLIA 342
A G+NG GKS L ICF L ++S + A
Sbjct: 29 AITGLNGSGKSNILDAICFVLGITNMSTVRA 59
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +1
Query: 7 VLDKLRDHLIGKNV-----AADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTE 159
V+ K DH V AD+ K D IK++GKV G+ D K VK + +
Sbjct: 179 VVSKAHDHFANIAVDAVLSVADLQRKDVDFELIKVDGKVGGSVDD-TKLVKGVVVD 233
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 150 PHRVPRADTVAEASRGHPAGLSARQAGGQAL 242
PHRV R +++ +R HP ++ R Q L
Sbjct: 235 PHRVGRIASISGGARSHPYSIALRFTQRQIL 265
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 214 LHAKQEGRP-YVMAFCGVNGVGKSTNL 291
LH RP V+ G NG+GKST L
Sbjct: 94 LHRLPTPRPGQVLGLVGTNGIGKSTAL 120
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.4 bits (53), Expect = 8.7
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Frame = +1
Query: 31 LIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAK-TVKATLTESLVRILSPKRRVDILR 207
L+G+ +A+ I++K+ D + K L + D ++ T++ + L+ R+ +
Sbjct: 405 LVGEELASQISSKIYDDLHAFY--KSLNSVDGISNLTIEEEELVNTDFSLAYGGRLLLSH 462
Query: 208 DCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIEN 321
LH + R V+ G NG GKST L I + +EN
Sbjct: 463 TNLHLYRGHRYGVV---GHNGCGKSTLLRAIGDYKVEN 497
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 368 PWSSCARTRGTSTRCTRPRATTHDTWSRSTRRDTA 472
P ++ ART T+ R T T++ + S STR T+
Sbjct: 153 PTTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTS 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,678
Number of Sequences: 5004
Number of extensions: 50664
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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