Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0992
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 235 2e-62
01_07_0240 - 42227132-42227245,42227332-42227394,42227484-422275... 47 1e-05
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 42 4e-04
05_06_0027 - 25029725-25030017,25030097-25030211,25030347-250305... 38 0.011
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 31 0.98
01_06_0874 + 32646039-32646269,32646351-32646450,32647400-326474... 31 0.98
03_05_0654 + 26479416-26479605,26480058-26480246,26480674-264809... 30 2.3
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 29 3.0
08_02_1276 + 25811020-25811512,25812134-25812541,25814682-258148... 29 3.9
12_01_0235 + 1765117-1766770,1766881-1766984 29 5.2
09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,937... 29 5.2
03_03_0199 - 15363680-15363739,15363879-15364070,15364154-153646... 29 5.2
03_02_0091 + 5574528-5577254 29 5.2
11_06_0437 - 23533218-23536382 28 6.9
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907... 28 6.9
01_07_0379 + 43177978-43178572,43178643-43178674 28 6.9
08_02_0535 + 18298244-18298486,18299937-18300353,18300680-183007... 28 9.1
08_01_0628 - 5460030-5462960 28 9.1
01_04_0138 + 16554175-16554822 28 9.1
>08_02_1023 - 23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 235 bits (576), Expect = 2e-62
Identities = 116/201 (57%), Positives = 151/201 (75%)
Frame = +1
Query: 1 RPVLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILS 180
+P L L+D L+ KNVA +IA KLC+SVA LEGK LG+F ++ TV+ + E+L+RIL+
Sbjct: 765 QPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILT 824
Query: 181 PKRRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFR 360
P+R +DILRD AK+ G+PYV+ F GVNGVGKSTNLAK+ +WL++++LSV +AACDTFR
Sbjct: 825 PRRSIDILRDVHAAKERGKPYVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFR 884
Query: 361 AGAVEQLRTHTRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVL 540
+GAVEQLRTH R + ++EKGY KD A +A EAI+ A+ K+DVVL
Sbjct: 885 SGAVEQLRTHAR-------------RLQIPIFEKGYEKDPAVVAKEAIQEATRNKSDVVL 931
Query: 541 IDTAGRMQDNEPLMRALAKLI 603
+DTAGRMQDNEPLMRAL+KLI
Sbjct: 932 VDTAGRMQDNEPLMRALSKLI 952
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/43 (62%), Positives = 31/43 (72%)
Frame = +2
Query: 608 VNEPDTVLFVGXALVXNEAVDQLVKFNQALADYSSXSIPHVID 736
+N PD VLFVG ALV N+AVDQL KFNQ LAD S+ +ID
Sbjct: 954 LNSPDLVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRLID 996
>01_07_0240 -
42227132-42227245,42227332-42227394,42227484-42227552,
42227716-42227798,42228056-42228176,42228335-42228372,
42228932-42228990,42229076-42229149,42229241-42229753
Length = 377
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = +1
Query: 235 RPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQL 381
+P V+ GVNG GK+T+L K+ + + VL+AA DTFRA A +QL
Sbjct: 197 KPAVIMIVGVNGGGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQL 245
>11_01_0334 +
2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 445 VTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIR 606
V +Y +G + IA I+ A KTDV+++DTAGR+Q ++ +M L ++ R
Sbjct: 640 VPVYSEGTEAKPSQIAKNGIKEAKSKKTDVIIVDTAGRLQVDKAMMSELKEVKR 693
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 445 VTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKL 600
V +Y +G A I A+ A D +++DTAGR+Q ++ +M L ++
Sbjct: 216 VPVYSEGTEAKPAQITKNAVEEAKRKNIDAIVMDTAGRLQIDKSMMVELKEV 267
>05_06_0027 -
25029725-25030017,25030097-25030211,25030347-25030504,
25030582-25030682,25030846-25030994,25031089-25031239,
25031329-25031482,25032249-25032321,25032446-25032676
Length = 474
Score = 37.5 bits (83), Expect = 0.011
Identities = 28/123 (22%), Positives = 48/123 (39%)
Frame = +1
Query: 232 GRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRXXXXX 411
G+P G GK+T K + + DTFRAGA +QL+ +
Sbjct: 90 GKPSFTPTKGKPSSGKTTTCTKYAHYHQLKGFKPSLVCADTFRAGAFDQLKQNA------ 143
Query: 412 XXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRAL 591
+ Y D IA+E + K+D++++DT+GR + L +
Sbjct: 144 -------TKAKIPYYGSYMESDPVKIAVEGVERFRKEKSDLIIVDTSGRHKQEAALFEEM 196
Query: 592 AKL 600
++
Sbjct: 197 RQV 199
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 31.1 bits (67), Expect = 0.98
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +1
Query: 193 VDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAV 372
V +LRD Q G + GVNG GK+T L +I L + D ++ A D R +
Sbjct: 103 VTVLRDVSWEVQRGEK--VGLVGVNGAGKTTQL-RIIAGLEDPDAGAVVKAKDNMRIAFL 159
Query: 373 EQ 378
Q
Sbjct: 160 SQ 161
>01_06_0874 +
32646039-32646269,32646351-32646450,32647400-32647461,
32647503-32647609,32647689-32647839,32647925-32648073,
32648557-32648657,32648730-32648887,32648968-32649015,
32649028-32649142,32649212-32649543
Length = 517
Score = 31.1 bits (67), Expect = 0.98
Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
Frame = +1
Query: 226 QEGRPYVMAFCGVNG----VGKSTNLAK-ICFWLIENDLSVLIAACDTFRAGAVEQLRTH 390
++G+P V+ F G+ + S + + ++ + DTFRAGA +QL+ +
Sbjct: 97 KKGKPCVVMFVGLQDSLIELQYSIPMTSTVSMQVLRKGFKPALVCADTFRAGAFDQLKQN 156
Query: 391 TRXXXXXXXXXXXXXXXMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDN 570
+ Y D IA+E + D++++DT+GR +
Sbjct: 157 ATKAK-------------IPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQE 203
Query: 571 EPLMRALAKL 600
L + ++
Sbjct: 204 AALFEEMRQV 213
>03_05_0654 +
26479416-26479605,26480058-26480246,26480674-26480989,
26481286-26481844
Length = 417
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 362 PAPWSSCARTRGTSTRCTRPRATTHDTWSRSTRRDTAKTRPA*QWKQYDTRLTLKPTSCS 541
P P C RT G RC++ H R R+ ++R + +R T+K T C+
Sbjct: 143 PEP-GRCRRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKP---VENQSRKTVKETPCA 198
Query: 542 STL 550
+L
Sbjct: 199 GSL 201
>01_06_1713 -
39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 238 PYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAA 345
P A G+NG GKS L ICF L DL + AA
Sbjct: 25 PLFNAITGLNGSGKSNILDSICFVLGITDLRQVRAA 60
>08_02_1276 +
25811020-25811512,25812134-25812541,25814682-25814878,
25815412-25815575,25815960-25816056,25816102-25816179,
25817840-25817919,25817961-25818082,25818203-25818276
Length = 570
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Frame = +1
Query: 67 KLCDSVAI--KLEGKVL---GTFDSVAKTVK-ATLTESLVRILSPKRRVDILRDCLHAKQ 228
K C+ +A+ K+ ++L G+F+ K+ + A+ S +R LS KRR D+ DC H +Q
Sbjct: 145 KYCERMAVFDKMITQLLKDPGSFNISKKSPRSASKLASTLRNLSFKRRDDLQEDCEHLQQ 204
Query: 229 E 231
+
Sbjct: 205 Q 205
>12_01_0235 + 1765117-1766770,1766881-1766984
Length = 585
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -1
Query: 423 RGRVQRVEVPRVRAQLLHGAGAERVARRYQHRQIVLDQPEADLRQVRRFTDAVHPAER 250
R ++R + R ++ G GAERV R +R+ A LRQV D V R
Sbjct: 455 RAVLERDVLRRAAVGVIAGEGAERVERPETYRRWQARNRRAGLRQVAVEADVVEAVRR 512
>09_02_0434 +
9365038-9366150,9367352-9368680,9368906-9370012,
9370960-9371022
Length = 1203
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 199 ILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAGAVEQ 378
IL + L EG ++ CG GVGK+ L +I + + L+ R +V+
Sbjct: 141 ILEEALRCITEGPSAIIGICGPGGVGKTHLLKRINNNFVGDSTFRLVIFVTATRGCSVQT 200
Query: 379 LRT 387
++T
Sbjct: 201 IQT 203
>03_03_0199 -
15363680-15363739,15363879-15364070,15364154-15364605,
15364699-15365101
Length = 368
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 419 GGCSALRCRVCVRSCSTAPARNVSHAA 339
GGC A+RCR C S P V A
Sbjct: 15 GGCGAVRCRHCSASLPAMPGARVIQCA 41
>03_02_0091 + 5574528-5577254
Length = 908
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 211 CLHAKQEGRPYVMAFCGVNGVGKSTNLAKI 300
CL + G V+A CG+ GVGKST L +I
Sbjct: 166 CLDDRDAG---VVAICGMAGVGKSTLLRRI 192
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 208 DCLHAKQEGRPYVMAFCGVNGVGKSTNLAKI 300
D H K+E PY +A G G+GK+T KI
Sbjct: 206 DIEHKKKE--PYKLAIVGTGGIGKTTLAQKI 234
>02_05_1241 -
35189111-35189389,35189604-35189711,35189982-35190713,
35190811-35191230,35191484-35191565,35191719-35192002,
35193104-35193256
Length = 685
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 160 SLVRILSPKRRVDILRDCLHAKQEGRPYVMAFCGVNGVGKST 285
S + + P ++ D L C K+ + CG +G GKST
Sbjct: 128 SSYKYVGPNQKADFLLAC-RIKERKESVTVLLCGTSGCGKST 168
>01_07_0379 + 43177978-43178572,43178643-43178674
Length = 208
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +1
Query: 193 VDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICF-WLIENDLSVLIAACDTFRAGA 369
+D LR+ L Q G C + C+ W N VL CD+ +AG
Sbjct: 76 LDYLRNDLTPVQSGCCKPPTACTYYDDAQQQQQQPDCYRW--SNAPGVLCYGCDSCKAGV 133
Query: 370 VEQLRTH 390
+EQLR H
Sbjct: 134 LEQLRRH 140
>08_02_0535 +
18298244-18298486,18299937-18300353,18300680-18300757,
18300893-18301045,18301131-18301239,18301321-18301487,
18301571-18301954
Length = 516
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = -2
Query: 182 GDSIRTRDSVRVAFTVLATLSKVPSTFPSSLMATLSQSLLAMSAATFFP 36
G + TRDSV + +T ATL V S + L ++ S+ + SAATF P
Sbjct: 334 GGLLFTRDSVNLQYTTTATL--VLSIYSKVLKSSGSRG-VRCSAATFSP 379
>08_01_0628 - 5460030-5462960
Length = 976
Score = 27.9 bits (59), Expect = 9.1
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Frame = +1
Query: 1 RPVLDKLRDHLIGKNVA---ADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVR 171
R V +KL L N D+ N ++ E + +A+ ++ E ++
Sbjct: 121 RKVREKLGQLLEAANYQRQRVDVMNNFVSCGELRREDDAVAAGRRMAENARSMDKEEIIG 180
Query: 172 ILSPKRRVDILRDCL--HAKQEGRPYVMAFCGVNGVGKSTNLAKI 300
S R V ++R L A + R ++A CG+ GVGK+T +A +
Sbjct: 181 F-SDHREV-LVRWLLAEDAAEPRRRTLLAVCGMGGVGKTTLVASV 223
>01_04_0138 + 16554175-16554822
Length = 215
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 165 RADTVAEASRGHPAGLSARQAGGQALRHGVL-RGERRR 275
R VAE + GH G S+R+ AL + RG RRR
Sbjct: 79 REREVAELTEGHGDGESSRRREAAALHRSTMRRGSRRR 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,838,041
Number of Sequences: 37544
Number of extensions: 438701
Number of successful extensions: 1571
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -